Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N12
         (273 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   1.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   3.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   6.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    19   8.4  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 166 LTGGGILRLETLTIRRFYPFIIYEQ--TSIKNF 74
           L+GG ILR +   +++ +PF  Y+    +I NF
Sbjct: 134 LSGGIILRKKREFMQKIWPFKEYQMNGNNITNF 166


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = +2

Query: 53  PTPQTKPEILYTGLFINNEWVKSSDGKSFKTENPATGQVI 172
           P P   P++  +  F+      S +GK+F  ++     +I
Sbjct: 268 PHPPYSPDLAPSDYFLFRSLQNSLNGKNFNNDDDIKSYLI 307


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 118 FYPFIIYEQTSIKN 77
           + PF+I EQTSI +
Sbjct: 858 YKPFLIPEQTSISH 871


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 143 TENPATGQVITEV 181
           TE P T +VIT++
Sbjct: 298 TERPTTNEVITKI 310


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 151 ILRLETLTIRRFYPFIIYEQTS 86
           I+ L+T  I R YP    +QTS
Sbjct: 147 IIDLKTDKILRIYPLKSSDQTS 168


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 235 FQIGFSVEIDGC 270
           ++IG SVE D C
Sbjct: 388 YRIGSSVEFDWC 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,067
Number of Sequences: 438
Number of extensions: 1169
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)