Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N11
         (202 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484...    26   3.6  
12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593     26   4.8  
05_03_0580 + 15730927-15731271,15731353-15731937                       26   4.8  
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748...    25   8.4  

>03_03_0168 -
           15047383-15047847,15048085-15048192,15048313-15048464,
           15048555-15048752,15049553-15050856,15051281-15051354,
           15051458-15051492,15052853-15053015
          Length = 832

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 122 PEEVTSTEVKESPIKKSPTKKTEVP 196
           P +V +    E+P+ K+PT K E P
Sbjct: 200 PPKVNAVATHEAPLSKAPTDKGEEP 224


>12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593
          Length = 129

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 144 KSRNLQLRNLPPKKLKY 194
           K R  + R+LPPKK+KY
Sbjct: 5   KERAAESRSLPPKKVKY 21


>05_03_0580 + 15730927-15731271,15731353-15731937
          Length = 309

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 169 FLNWRFLDFRGSHLFGCGVLLF 104
           F NW F+ F GS + G  VL++
Sbjct: 187 FFNWYFIFFYGSAVLGSTVLVY 208


>04_04_1477 +
           33873976-33874080,33874433-33874544,33874777-33874874,
           33875548-33876261,33876348-33876518,33876955-33877011,
           33877096-33878718
          Length = 959

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 92  DAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVP 196
           D ++EK    P E ++ ++ E  I++   + TEVP
Sbjct: 234 DESIEKPADEPIEKSADQITERSIEQPAERVTEVP 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,443,172
Number of Sequences: 37544
Number of extensions: 59488
Number of successful extensions: 210
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)