Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N11
(202 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF560737-1|ABQ59047.1| 877|Homo sapiens NEFM protein protein. 30 1.2
Y00067-1|CAA68276.1| 916|Homo sapiens NF-M protein. 30 1.6
EF560736-1|ABQ59046.1| 916|Homo sapiens NEFM protein protein. 30 1.6
BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium p... 30 1.6
AF181990-1|AAF00492.1| 260|Homo sapiens neurofilament-3 (150 kD... 30 1.6
BC021144-1|AAH21144.1| 740|Homo sapiens FLJ30092 protein protein. 28 4.8
AF174498-1|AAF36539.1| 1381|Homo sapiens GR AF-1 specific protei... 28 4.8
AB014514-1|BAA31589.3| 3006|Homo sapiens KIAA0614 protein protein. 28 4.8
AY354203-1|AAQ63888.1| 1013|Homo sapiens RAN-binding protein 2-l... 28 6.4
AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein. 28 6.4
>EF560737-1|ABQ59047.1| 877|Homo sapiens NEFM protein protein.
Length = 877
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Frame = +2
Query: 86 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPES 202
+ADA VEK + A V + V+E SP+ KSP + K+ VP+S
Sbjct: 602 VADAKVEKPEKAKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKS 646
>Y00067-1|CAA68276.1| 916|Homo sapiens NF-M protein.
Length = 916
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Frame = +2
Query: 86 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPES 202
+ADA VEK + A V + V+E SP+ KSP + K+ VP+S
Sbjct: 602 VADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKS 646
>EF560736-1|ABQ59046.1| 916|Homo sapiens NEFM protein protein.
Length = 916
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Frame = +2
Query: 86 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPES 202
+ADA VEK + A V + V+E SP+ KSP + K+ VP+S
Sbjct: 602 VADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKS 646
>BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium
polypeptide 150kDa protein.
Length = 916
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Frame = +2
Query: 86 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPES 202
+ADA VEK + A V + V+E SP+ KSP + K+ VP+S
Sbjct: 602 VADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKS 646
>AF181990-1|AAF00492.1| 260|Homo sapiens neurofilament-3 (150 kD
medium) protein.
Length = 260
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Frame = +2
Query: 86 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPES 202
+ADA VEK + A V + V+E SP+ KSP + K+ VP+S
Sbjct: 165 VADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKS 209
>BC021144-1|AAH21144.1| 740|Homo sapiens FLJ30092 protein protein.
Length = 740
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 104 EKQDAAPEEVTSTEVKESPIKKSPTKKTEVPE 199
+K P+ ++ E +KSPTKK EVPE
Sbjct: 117 KKPTVKPKSPEKSKPDEKDPEKSPTKKQEVPE 148
>AF174498-1|AAF36539.1| 1381|Homo sapiens GR AF-1 specific protein
phosphatase protein.
Length = 1381
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 104 EKQDAAPEEVTSTEVKESPIKKSPTKKTEVPE 199
+K P+ ++ E +KSPTKK EVPE
Sbjct: 758 KKPTVKPKSPEKSKPDEKDPEKSPTKKQEVPE 789
>AB014514-1|BAA31589.3| 3006|Homo sapiens KIAA0614 protein protein.
Length = 3006
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 104 EKQDAAPEEVTSTEVKESPIKKSPTKKTEVPE 199
+K P+ ++ E +KSPTKK EVPE
Sbjct: 2383 KKPTVKPKSPEKSKPDEKDPEKSPTKKQEVPE 2414
>AY354203-1|AAQ63888.1| 1013|Homo sapiens RAN-binding protein 2-like
1 short isoform protein.
Length = 1013
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 107 KQDAAPEEVTSTEVKESPIKKSPTKK 184
++DA + V+S+ V +SP+ SP +K
Sbjct: 504 REDALDDNVSSSSVHDSPLASSPVRK 529
>AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein.
Length = 30000
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 89 ADAAVEKQDAAPEEVTSTEVKESPIKKSP---TKKTEVP 196
A+ E + AAP +VT K P KK+P KK E+P
Sbjct: 11606 AEVVEEPEPAAPPQVTVPPKKPVPEKKAPAVVAKKPELP 11644
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,887,480
Number of Sequences: 237096
Number of extensions: 330056
Number of successful extensions: 1034
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 76,859,062
effective HSP length: 45
effective length of database: 66,189,742
effective search space used: 1389984582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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