Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N09
(286 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 27 0.52
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 27 0.69
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 1.2
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 25 2.8
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 2.8
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 24 4.9
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 23 6.5
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 23 6.5
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 23 8.5
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 23 8.5
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2... 23 8.5
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 23 8.5
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 23 8.5
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 23 8.5
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 27.1 bits (57), Expect = 0.52
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 138 NSSDDTMSFSSLFSVTGAAFINPIKN 61
N S T SFS FS TG + PI+N
Sbjct: 193 NESFQTPSFSGSFSQTGTYQLTPIRN 218
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.6 bits (56), Expect = 0.69
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 284 QLPRRTLLYRYSCLPMTYHPSLRQSLTN 201
+LPR TL Y + T HP L + N
Sbjct: 345 ELPRETLYYEFFAPDYTLHPRLTTKIEN 372
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 1.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 159 YWTNSFMNSSDDTMSFSSLFSVTGAAF 79
++T F+N+ +S S LFS+ GA F
Sbjct: 514 FFTTIFLNTYASMISSSDLFSILGAHF 540
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 2.8
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -2
Query: 168 LDEYWTNSFMNSSDDTMSFSS 106
L E WTNS N SDD FSS
Sbjct: 472 LAESWTNSAKN-SDDPSKFSS 491
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 2.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 186 RLTMSYLDEYWTNSFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPK 49
R + SY DE + SSD + SS FS + + P + T PK
Sbjct: 320 RRSRSYSDE--DEESVYSSDVSTESSSQFSSRSSEYSKPSRPTAPK 363
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 23.8 bits (49), Expect = 4.9
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 101 NNDEKLIVSSELFINEFVQYSSKYDIVSL 187
+N E ++S + +NE +QY S + ++S+
Sbjct: 927 SNAETSSITSVISVNEALQYPSGFALISI 955
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 23.4 bits (48), Expect = 6.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 86 APVTENNDEKLIVSSELFINEFVQY 160
APV N D K + S N+F+ Y
Sbjct: 17 APVAANIDAKKVAMSNFEKNKFINY 41
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 23.4 bits (48), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 65 LIGLIKAAPVTENNDEKLIVSSELFINEFVQYSSK 169
L GL+ A +ENN E LI S N Y K
Sbjct: 182 LEGLVGANENSENNREALICSHCFHHNGLASYGEK 216
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 147 SFMNSSDDTMSFSSLF 100
S +NSS+ T+SFS +F
Sbjct: 539 SSLNSSNSTVSFSGIF 554
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 23.0 bits (47), Expect = 8.5
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 180 TMSYLDEYWTNSFMNS 133
T++Y +YW+N MN+
Sbjct: 356 TLTYAIQYWSNHTMNA 371
>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
L22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 137 FINEFVQYSSKYDIVSLTVPLNSLNF 214
+IN+F++ S + + S T+ LNS +
Sbjct: 3 YINQFMKISKGFLVPSSTIGLNSKTY 28
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 23.0 bits (47), Expect = 8.5
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 41 TDFLGVVFLIGLIKAAPVTENNDEKLIVSSELFINEFVQYSSKYDIVSLTVPLNSL 208
TD G L+ +I + E+NDEKL +E I+ V + + + L SL
Sbjct: 123 TDIGGKDLLVPIITDRMLPESNDEKLKHHAESAIHTTVINKEDEEQERVALDLQSL 178
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 148 ICPVLVQVRHCQSYSSSQ 201
ICP+ V+H YSSS+
Sbjct: 250 ICPMQATVKHRMVYSSSK 267
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 23.0 bits (47), Expect = 8.5
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 207 NELRGTVRLTMSYLDEYWTNSFMNSSD--DTMSFSSLFSVTGAAFINPI 67
N+L GT+R TMS + + + S +S+ D F+ + + F PI
Sbjct: 113 NKLNGTLRETMSRMPSFESISLSETSNALDDSCFNDDWITIESEFSPPI 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,044,047
Number of Sequences: 5004
Number of extensions: 16906
Number of successful extensions: 56
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -