Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N08
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0516 - 18993797-18994141 31 0.35
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 30 1.1
01_02_0050 + 10649275-10649655,10649807-10649921,10651003-106510... 29 1.8
12_02_0925 - 24398851-24398998,24399478-24399718,24399886-244005... 28 4.3
07_03_1652 - 28409097-28409165,28409788-28409911,28410317-284105... 28 4.3
07_03_0014 - 12428713-12428860,12429340-12429580,12429664-124303... 28 4.3
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 28 4.3
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876... 28 4.3
01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,799... 28 4.3
10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713... 27 5.6
10_08_0457 + 18076911-18077272,18077356-18077475,18077554-180777... 27 7.4
06_01_0892 - 6827510-6827590,6829348-6830412 27 9.8
04_04_0419 + 25086456-25086768,25087302-25087369,25087458-250876... 27 9.8
02_05_1149 + 34471730-34471790,34471975-34472056,34472605-344732... 27 9.8
>07_03_0516 - 18993797-18994141
Length = 114
Score = 31.5 bits (68), Expect = 0.35
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 314 PANTRLVPYRLGNPRHLRTPYPLGKRCLRVRSCSNVNSG 430
PA L+P+ + P HL +GKR LRV C N + G
Sbjct: 8 PATVVLIPFCV--PGHLTPMLEVGKRMLRVGFCGNADDG 44
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +1
Query: 100 QSCPGVSNDGCS--VNEVRIDPC-NTNHKCVLKQGTVGRMTVNFTPNFDASKVKFGLY-W 267
Q PG+ DGC+ C N N KC+ Q + +++ N K F LY +
Sbjct: 120 QDIPGIRQDGCASYFFHKNFKECANENSKCIRWQKSGNPISITLDGNLQGCKEVFVLYAY 179
Query: 268 DNGGDVP 288
+ G+ P
Sbjct: 180 ETDGNNP 186
>01_02_0050 +
10649275-10649655,10649807-10649921,10651003-10651009,
10651035-10651216,10651318-10651530,10651621-10651688,
10651772-10651846,10651961-10652068,10652413-10652530,
10652652-10652793,10653084-10653140,10653281-10653701,
10654064-10654528
Length = 783
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 103 SCPGVSNDGCSVNEVRIDPCNTNHKCVLKQGTVGRMTVNFTPNFDASKVKFGLY 264
S P DGC+VN N HKC+ V + N+D+S ++ LY
Sbjct: 103 SGPCCQVDGCTVNLSSARDYNKRHKCIYACDIVLLYLLQNAFNWDSSLIRILLY 156
>12_02_0925 - 24398851-24398998,24399478-24399718,24399886-24400536,
24400625-24400828,24400902-24401583,24401678-24401934,
24402010-24402704,24403150-24403397
Length = 1041
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 289 FPDLQSDNACEYTTCPLQAGQPKTLTYSLPIGKKVPKGTFMFKCKFWNE 435
F D+Q D++ ++ ++G P T Y+ P P T++++ W E
Sbjct: 946 FSDIQQDSSSSFSASSFESGYP-TYVYNRPQASDYPATTWVYE---WQE 990
>07_03_1652 - 28409097-28409165,28409788-28409911,28410317-28410557,
28410641-28411375,28411464-28411667,28411741-28412422,
28412517-28412773,28412849-28413543,28414003-28414250
Length = 1084
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 289 FPDLQSDNACEYTTCPLQAGQPKTLTYSLPIGKKVPKGTFMFKCKFWNE 435
F D+Q D++ ++ ++G P T Y+ P P T++++ W E
Sbjct: 974 FSDIQQDSSSSFSASSFESGYP-TYVYNRPQASDYPATTWVYE---WQE 1018
>07_03_0014 - 12428713-12428860,12429340-12429580,12429664-12430398,
12430487-12430690,12430764-12431445,12431540-12431796,
12431872-12432566,12433012-12433172,12434039-12434383,
12434399-12434631,12434656-12434740
Length = 1261
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 289 FPDLQSDNACEYTTCPLQAGQPKTLTYSLPIGKKVPKGTFMFKCKFWNE 435
F D+Q D++ ++ ++G P T Y+ P P T++++ W E
Sbjct: 1166 FSDIQQDSSSSFSASSFESGYP-TYVYNRPQASDYPATTWVYE---WQE 1210
>05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 289 FPDLQSDNACEYTTCPLQAGQPKTLTYSLPIGKKVPKGTFMFKCKFWNE 435
F D+Q D++ ++ ++G P T Y+ P P T++++ W E
Sbjct: 1095 FSDIQQDSSSSFSASSFESGYP-TYVYNRPQASDYPATTWVYE---WQE 1139
>03_03_0039 - 13986844-13986907,13987219-13987273,13987492-13987606,
13987652-13987774,13987962-13988015,13988352-13988411,
13988522-13988584,13988790-13988863,13989177-13989261,
13989376-13989456,13989764-13989856,13990275-13990339,
13990407-13990482,13990570-13990635,13991094-13991153,
13991233-13991322,13991755-13991817,13992502-13992625,
13993031-13993271,13993355-13993624,13993715-13994089,
13994178-13994381,13994455-13995136,13995231-13995279,
13995362-13995488,13995564-13996258,13996718-13996965
Length = 1433
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 289 FPDLQSDNACEYTTCPLQAGQPKTLTYSLPIGKKVPKGTFMFKCKFWNE 435
F D+Q D++ ++ ++G P T Y+ P P T++++ W E
Sbjct: 917 FSDIQQDSSSSFSASSFESGYP-TYVYNRPQASDYPATTWVYE---WQE 961
>01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,
7993517-7993773,7993868-7994169,7994342-7994580,
7994654-7994857,7994946-7995680,7995764-7996155
Length = 971
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 289 FPDLQSDNACEYTTCPLQAGQPKTLTYSLPIGKKVPKGTFMFKCKFWNE 435
F D+Q D++ ++ ++G P T Y+ P P T++++ W E
Sbjct: 875 FSDIQQDSSSSFSVSSFESGYP-TYVYNRPQASDYPATTWVYE---WQE 919
>10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,
7131375-7131459,7131609-7131771,7132861-7132937,
7133016-7133160,7133236-7133537,7133615-7133720,
7134781-7134935,7135556-7135712,7135799-7135891,
7136232-7136359,7136439-7136696,7136855-7137145,
7137235-7137318,7138335-7138468,7138557-7138784,
7139778-7139958,7140021-7140108,7140268-7140434,
7140750-7141012,7141117-7141120
Length = 1216
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 1 LRHEDTSDIMVLLYFVFAVCLSLGL 75
++ E T DI++L+ ++A CL LG+
Sbjct: 981 MKRESTEDILLLMGALYAACLFLGV 1005
>10_08_0457 +
18076911-18077272,18077356-18077475,18077554-18077782,
18077993-18078652,18079224-18079425,18079521-18079611,
18079780-18079837
Length = 573
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 456 ATLAPVLFIPEFTFEHERTLRHLFPNG*GVRKCL 355
AT +L EF + H ++HLFP ++K L
Sbjct: 152 ATQVEILTKREFLYTHLAQMKHLFPEAIQIKKIL 185
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 136 PSSHHSKPQDRIEFRP 89
P +HHSKPQ FRP
Sbjct: 73 PYAHHSKPQPAYGFRP 88
>04_04_0419 +
25086456-25086768,25087302-25087369,25087458-25087681,
25087929-25088012,25088593-25088806,25089252-25089428,
25089526-25089645,25089865-25089991,25090104-25090130,
25090526-25091007
Length = 611
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 340 QAGQPKTLTYSLPIGKKVPKGTFMFKCKFWN 432
+AG P T Y L ++P G F +K WN
Sbjct: 544 RAGSPSTSLYHLT-ACRLPAGLFCYKANGWN 573
>02_05_1149 +
34471730-34471790,34471975-34472056,34472605-34473299,
34473375-34473631,34473726-34474407,34474481-34474684,
34474773-34474903,34475068-34475263,34475347-34475587,
34476067-34476214
Length = 898
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 289 FPDLQSDNACEYTTCPLQAGQPKTLTYSLPIGKKVPKGTFMFKCKFWNE 435
F D+Q D++ ++ ++G P T Y+ P P T++++ W E
Sbjct: 803 FSDIQQDSSSSFSASNFESGYP-TYVYNHPQASDYPVTTWVYE---WQE 847
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,884,574
Number of Sequences: 37544
Number of extensions: 351400
Number of successful extensions: 877
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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