Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N07
         (187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    69   8e-14
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    69   8e-14
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    24   2.3  
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    23   4.0  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    23   4.0  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    23   5.3  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    23   5.3  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    23   5.3  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    23   7.0  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 68.9 bits (161), Expect = 8e-14
 Identities = 30/49 (61%), Positives = 37/49 (75%)
 Frame = +3

Query: 36  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYV 182
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYV 49


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 68.9 bits (161), Expect = 8e-14
 Identities = 30/49 (61%), Positives = 37/49 (75%)
 Frame = +3

Query: 36  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYV 182
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYV 49


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 78  LFEVVDEHKLRIFYEKRMGAEVDADLLGDEW 170
           +FE V EH L   Y+K +  ++D  L+   W
Sbjct: 349 VFEYVLEHTLPHLYQKIIELDMDLKLITINW 379


>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 96  EHKLRIFYEKRMGAEVDADLLGDEWKG 176
           EHK + FYEK +G      +    W+G
Sbjct: 53  EHKGKPFYEKLVGFMASGPVCAMIWEG 79


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 186 GEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 37
           G ++ S+R L+ L+ +Q  Y          HP    TSD     M+  ++
Sbjct: 388 GVNSPSLRPLQSLNNVQNSYRVASTQAPPPHPLRNYTSDAESISMRSKST 437


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 17  EGTDRSHEVERFIPGNGMSEV 79
           EGT R H+V+  + G G++ +
Sbjct: 275 EGTRRRHQVDTIVEGVGINRM 295


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 72   QKLFEVVDEHKLRIFYE 122
            Q +FE+++ H  +IF+E
Sbjct: 1225 QTIFEMIESHLSKIFFE 1241


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 123 FHRRYGACAHPPLQITSDIPLPGMKRSTS*LRSV 22
           F+ R+GAC H   ++   I   GM      +R V
Sbjct: 520 FYSRWGACLHWSSKLKKGILCGGMNELNEPVREV 553


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 66  GCQKLFEVVDEHKLRIFY 119
           G  KLF+ V EH L +F+
Sbjct: 344 GTLKLFDFVKEHVLDVFH 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,676
Number of Sequences: 5004
Number of extensions: 10455
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)