Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N07
         (187 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...    68   1e-12
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...    66   4e-12
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    29   0.69 
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201...    27   2.8  
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343...    26   3.7  
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    26   3.7  
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093...    25   6.5  
05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023     25   8.5  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 28/49 (57%), Positives = 36/49 (73%)
 Frame = +3

Query: 36  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYV 182
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYV 49


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 27/49 (55%), Positives = 36/49 (73%)
 Frame = +3

Query: 36  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYV 182
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYV 49


>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 125 LFIEDTELVLIHHFK*LLTSRCRV*NVQLHDCDQSL 18
           LF++ T  V +  F  L   RC V + +LH C Q+L
Sbjct: 76  LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNL 111


>01_07_0254 +
           42318181-42319471,42319581-42319792,42319909-42320132,
           42320232-42321009
          Length = 834

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +3

Query: 72  QKLF-EVVDEHKLRIFYEKR 128
           +KL+ E+ DE KLRI YEK+
Sbjct: 494 KKLYQEIKDEEKLRILYEKK 513


>10_08_0451 +
           18033065-18033253,18033746-18033805,18034256-18034324,
           18034751-18034786,18035081-18035146,18035345-18035443,
           18035543-18035620,18035724-18035802,18035999-18036093,
           18036251-18036335,18036505-18036698,18036804-18036922,
           18037015-18037057
          Length = 403

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 90  VDEHKLRIFYEKRMGAEVDADLLGDEWKGYVL 185
           ++ + +RIF  + +  E   D++  EW GY+L
Sbjct: 139 IEYYYIRIFENQDVEIEEKVDVIISEWMGYML 170


>08_02_1277 +
           25823835-25825113,25825201-25825418,25825501-25825724,
           25826468-25827080,25827735-25827775,25830549-25831191,
           25832595-25834012,25834110-25834251,25834415-25834522,
           25835346-25835558,25835643-25835753,25836099-25836293,
           25836555-25836695,25836835-25836909
          Length = 1806

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 72  QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 167
           +KL+ EV    +LRI YEKR+    + D+ GDE
Sbjct: 492 KKLYKEVKAGERLRIDYEKRLNHLRNQDVKGDE 524


>02_05_1197 -
          34908382-34908582,34908664-34908837,34909239-34909337,
          34909444-34909644,34910229-34910336,34910498-34910882,
          34911132-34911584,34911868-34912094,34912211-34912270
          Length = 635

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 67 PVAGYETFNFMTAISPFERHLV 2
          P A Y T+ F+TA S  ER L+
Sbjct: 26 PSAAYSTYRFVTASSAAERDLL 47


>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
          Length = 620

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 11  TFEGTDRSHEVERFIPGNGMS 73
           T  G DRS E ER +PG  +S
Sbjct: 588 TIRGADRSSEGERRLPGTEIS 608


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,727,137
Number of Sequences: 37544
Number of extensions: 76146
Number of successful extensions: 237
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)