Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N06
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 124 3e-30
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 123 7e-30
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 91 2e-20
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 76 1e-15
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 64 3e-12
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 25 2.4
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 24 4.3
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 24 5.6
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 23 9.9
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 23 9.9
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 124 bits (299), Expect = 3e-30
Identities = 63/98 (64%), Positives = 67/98 (68%)
Frame = +1
Query: 10 GAAVQAAILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXY 189
GAAVQAA+L GD SE+ QD GIETAGGVMT LIKRN Y
Sbjct: 370 GAAVQAAVLTGDTSEKTQDLLLLDVAPLSMGIETAGGVMTPLIKRNTTIPTKKSEIFSTY 429
Query: 190 SDNQPGVLIQVFEGERAMTKDNDLLGKFELTGIPPEPR 303
SDNQPGVLIQVFEGERA TKD +LLGKFEL+GIPP PR
Sbjct: 430 SDNQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPR 467
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 123 bits (296), Expect = 7e-30
Identities = 63/98 (64%), Positives = 67/98 (68%)
Frame = +1
Query: 10 GAAVQAAILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXY 189
GAAVQAAIL GD SE+ QD GIETAGGVMT LIKRN Y
Sbjct: 370 GAAVQAAILVGDTSEKTQDLLLLDVAPLSLGIETAGGVMTPLIKRNTTIPTKKSEVFSTY 429
Query: 190 SDNQPGVLIQVFEGERAMTKDNDLLGKFELTGIPPEPR 303
+DNQPGVLIQVFEGERA TKD +LLGKFEL+GIPP PR
Sbjct: 430 ADNQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPR 467
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 91.5 bits (217), Expect = 2e-20
Identities = 49/98 (50%), Positives = 58/98 (59%)
Frame = +1
Query: 10 GAAVQAAILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXY 189
GAAVQA +L G++ + + GIET GGVMT LI RN
Sbjct: 401 GAAVQAGVLSGEEGSD--NIVLLDVIPLTLGIETTGGVMTKLIGRNTPIPTRKSQIFSTA 458
Query: 190 SDNQPGVLIQVFEGERAMTKDNDLLGKFELTGIPPEPR 303
DNQ VLIQV+EGER +TKDN+LLGKF+L GIPP PR
Sbjct: 459 VDNQNTVLIQVYEGERTLTKDNNLLGKFDLRGIPPAPR 496
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 75.8 bits (178), Expect = 1e-15
Identities = 40/98 (40%), Positives = 51/98 (52%)
Frame = +1
Query: 10 GAAVQAAILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXY 189
GAA+Q +L G V+D GIET GGV T LI RN
Sbjct: 417 GAAIQGGVLSG----HVKDLVLLDVTPLSLGIETLGGVFTRLINRNTTIPTRKSQVFSTA 472
Query: 190 SDNQPGVLIQVFEGERAMTKDNDLLGKFELTGIPPEPR 303
+D Q V I+VF+GER + +DN L+G F+LTGI P P+
Sbjct: 473 ADGQTAVEIRVFQGERELVRDNKLIGNFQLTGIAPAPK 510
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 64.5 bits (150), Expect = 3e-12
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +1
Query: 10 GAAVQAAILHGDK-SEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXX 186
GAAVQAA+L S++ QD G+ G V + RN
Sbjct: 374 GAAVQAAVLTNKADSDKTQDLLLLDVVPLSLGVAMEGNVFGVVCPRNTPIPTIKKRTFTT 433
Query: 187 YSDNQPGVLIQVFEGERAMTKDNDLLGKFELTGIPPEPR 303
+DNQ V V++GER +N+ LG+F+LTGIPP PR
Sbjct: 434 VADNQTTVTFPVYQGERVNCAENEPLGEFQLTGIPPMPR 472
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 2.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 291 WDTGQFELAEEVVILGHGALTL 226
WD G+F L + I GH +L
Sbjct: 61 WDNGKFSLVDRFTIDGHSPTSL 82
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 24.2 bits (50), Expect = 4.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 245 PRITTSSASSN*PVSH 292
P I +SSASS+ P+SH
Sbjct: 45 PSIVSSSASSSYPISH 60
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 278 SSNLPRRSLSLVMARSPSNTWMSTP 204
+S++P R +S +PSN+ STP
Sbjct: 14 TSSIPLRQMSQPTTSAPSNSASSTP 38
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 23.0 bits (47), Expect = 9.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 284 PVSSNLPRRSLSLVMARSPSNTWMS 210
P +S + SLS V A+ P + W S
Sbjct: 232 PTTSPINSTSLSFVDAKKPGSKWPS 256
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 23.0 bits (47), Expect = 9.9
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -3
Query: 263 RRSLSLVMARSPSNTWMSTPGW 198
+RS+ + +S NT++S+PG+
Sbjct: 139 KRSILVHSVKSDKNTYLSSPGF 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.135 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,038,989
Number of Sequences: 5004
Number of extensions: 13425
Number of successful extensions: 36
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -