Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N05
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    74   5e-15
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    74   5e-15
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    26   0.95 
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   1.7  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   1.7  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    25   2.9  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    24   3.8  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    23   6.7  
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...    23   6.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    23   8.8  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 73.7 bits (173), Expect = 5e-15
 Identities = 37/70 (52%), Positives = 49/70 (70%)
 Frame = +3

Query: 75  KGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALKFLK 254
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 255 RRLGTHIRAK 284
           +RLGT  RAK
Sbjct: 73  KRLGTLKRAK 82


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 73.7 bits (173), Expect = 5e-15
 Identities = 37/70 (52%), Positives = 49/70 (70%)
 Frame = +3

Query: 75  KGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALKFLK 254
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 255 RRLGTHIRAK 284
           +RLGT  RAK
Sbjct: 73  KRLGTLKRAK 82


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 105 RPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAME 209
           RPA L+ ++T  SKFV  +    V R  Y K  ++
Sbjct: 27  RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +3

Query: 159 LVREVVGRAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKR 287
           ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVER 81


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 220 TLSNSIALFSYCARPTTSRTKSRTNLEC 137
           T+++S  LF+  A   T+ TKS  N+EC
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVEC 877


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 23  RNWSAKRPQNDKDIRWQKGY 82
           +NW    PQ   +  W+KGY
Sbjct: 219 KNWEYPSPQQMYNAMWRKGY 238


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = +3

Query: 42  GHKTTKISAGKKGITDKAIKIRPARLKGI------QTKHSKFV-RDLVREVVGRAQYEKR 200
           G+   K S      TDK   I+P  LKG+       TK ++ + RDL+R V+G    E +
Sbjct: 730 GNPVDKNSTSPSKSTDKLDPIKPVFLKGLFSVSTTSTKSTESIQRDLIR-VMGMLDIEYK 788

Query: 201 AME 209
            ++
Sbjct: 789 EIK 791


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 127 MPFSLAGLILMALSVIPFLPADIFVVLW 44
           M F  A +I   LS +PF+  D+  +LW
Sbjct: 139 MSFWGATVITNLLSAVPFIGDDLVHLLW 166


>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 69  GKKGITDKAIKIRPARLKGIQT 134
           GKK   D  ++++PA L G  T
Sbjct: 4   GKKDYIDSPLRMQPASLSGAST 25


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 126  IQTKHSKFVRDLVREVVGRAQY 191
            IQ  HSKF  +L +EV+    Y
Sbjct: 1038 IQGNHSKFTTNLQKEVIISPHY 1059


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,215,801
Number of Sequences: 5004
Number of extensions: 21763
Number of successful extensions: 61
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)