Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N05
(287 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 87 2e-18
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 86 4e-18
07_03_0078 - 13147741-13148913 32 0.085
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 0.80
07_03_0079 + 13169773-13170861 27 2.4
05_01_0113 + 760584-760861,760964-761021,761229-761306 27 3.2
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366... 27 3.2
02_01_0411 - 2998806-3000938 26 4.2
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485 26 5.6
09_06_0270 + 21954652-21955245,21955827-21955964,21956050-219562... 26 5.6
07_03_0409 + 17817046-17817126,17818320-17818523,17818744-178188... 26 5.6
08_02_0415 + 16898549-16898644,16899406-16899678,16899916-168999... 25 7.4
08_01_1033 - 10461135-10461377,10462124-10462354,10465853-104663... 25 9.8
04_04_1695 + 35433975-35437040 25 9.8
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 25 9.8
02_05_0522 - 29744368-29745534 25 9.8
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482... 25 9.8
02_01_0404 - 2945611-2948802 25 9.8
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 87.0 bits (206), Expect = 2e-18
Identities = 48/94 (51%), Positives = 59/94 (62%)
Frame = +3
Query: 6 RPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRA 185
+P+ + +G+ KGH TK + + RP+ KG TK FVR L+REVVG A
Sbjct: 5 QPKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFA 54
Query: 186 QYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKR 287
YEKR ELLKV KDKRALK KR+LGTH RAK+
Sbjct: 55 PYEKRITELLKVGKDKRALKVAKRKLGTHKRAKK 88
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 86.2 bits (204), Expect = 4e-18
Identities = 47/95 (49%), Positives = 60/95 (63%)
Frame = +3
Query: 3 TRPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGR 182
++P+ + +G+ KGH TK + + RP+ KG TK FVR+L+REV G
Sbjct: 4 SQPKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGF 53
Query: 183 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKR 287
A YEKR ELLKV KDKRALK KR+LGTH RAK+
Sbjct: 54 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKK 88
>07_03_0078 - 13147741-13148913
Length = 390
Score = 31.9 bits (69), Expect = 0.085
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 112 AGLILMALSVIPFLPADIFVVLWPF 38
AGL+ AL VIP LP + +V WPF
Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.7 bits (61), Expect = 0.80
Identities = 15/57 (26%), Positives = 34/57 (59%)
Frame = +3
Query: 90 KAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALKFLKRR 260
+A + + A L+ + S+ ++LV E +G+ EK+ +ELL + +++ ++LK +
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEK 694
>07_03_0079 + 13169773-13170861
Length = 362
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 112 AGLILMALSVIPFLPADIFVVLWP 41
AGL+ AL IP LP+ + +V WP
Sbjct: 44 AGLLYFALVGIPALPSILRLVAWP 67
>05_01_0113 + 760584-760861,760964-761021,761229-761306
Length = 137
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 36 RKGHKTTKISAGKKGITDKAIKIRPARL 119
RKGHK +ISA K+ T + +K P L
Sbjct: 81 RKGHKCDRISAEKRANTVELMKKMPQML 108
>04_04_1193 + 31634043-31634349,31634685-31634847,31635048-31636622,
31636653-31637541,31639401-31641266
Length = 1599
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 284 LRPDVCAE-ATLQELKGALIFRYFEQFHCPLLILC 183
L+ + CA ATL L+ R+ E F CP L LC
Sbjct: 1418 LKIEGCASLATLVGLQSLHSLRHLEVFRCPSLPLC 1452
>02_01_0411 - 2998806-3000938
Length = 710
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 197 LLILCAPNNFTNQIA--DKLRVFGLNAL*PSWPNFNGFVCNTLFASGYL 57
++I + N FT ++A + + L AL SW NFNG + ++++ L
Sbjct: 318 VIINLSTNKFTGELAKVNFSNLPNLKALDFSWNNFNGTIPESIYSCSNL 366
>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
Length = 483
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 105 RPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAME 209
RP +G SKF+R R++ G+A +++R E
Sbjct: 396 RPVCQEGDNLLVSKFLRTYNRDIHGKAMFDERITE 430
>09_06_0270 +
21954652-21955245,21955827-21955964,21956050-21956295,
21956407-21956520,21956633-21956815,21956926-21957143,
21957210-21957246,21957865-21958219,21958284-21958337,
21958513-21958529
Length = 651
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 239 GALIFRYF-EQFHCPLLILCAPNNFTNQIADKLRVFGL 129
G + F Y E F P+L+LC+ NN + D L+ G+
Sbjct: 258 GDVSFPYLIESF--PMLLLCSENNHLKPLIDFLQYIGI 293
>07_03_0409 +
17817046-17817126,17818320-17818523,17818744-17818856,
17819446-17819491,17819741-17819787,17820250-17820325,
17820865-17820937,17821059-17821204,17821382-17821467,
17821734-17821873,17821944-17822083,17822171-17822221,
17823644-17823702,17823793-17823949,17824793-17824845,
17824936-17825034,17825876-17825990,17826075-17826197,
17826417-17826584
Length = 658
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 230 IFRYFEQFHCPLLILCAPNN-FTNQIADKLRVFGLN 126
+ R+ + HC L L +PNN F ++ ++ + V G N
Sbjct: 385 VVRHGKNVHCSSLELASPNNLFLSEASNMVLVMGPN 420
>08_02_0415 +
16898549-16898644,16899406-16899678,16899916-16899996,
16900094-16900369,16900414-16900932
Length = 414
Score = 25.4 bits (53), Expect = 7.4
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +3
Query: 6 RPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRA 185
R FE + RK TTK SAG + K P L+G + K V R+ A
Sbjct: 245 RREFE-CVHARKPENTTKDSAGGSSFISEENKENPPLLEGNKKKAPLLVEG-KRKRPKVA 302
Query: 186 QYEKRAMELLKVSKDK-RALKFLKRRLGTHIRAKR 287
+Y+ +A + + +K R + F + TH KR
Sbjct: 303 KYDCKAHMAVGLRDNKWRVIAFQPKH--THPMVKR 335
>08_01_1033 -
10461135-10461377,10462124-10462354,10465853-10466336,
10466566-10466822
Length = 404
Score = 25.0 bits (52), Expect = 9.8
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 16 LKSQLVCEKATKRQRYPLAKR--VLQTKPLKLGQLG*RAFKPNTLSLSAIWFVKLLGAHS 189
L+S V + Q++P + VL+ L L + P TL +SA +L +++
Sbjct: 122 LRSSAVARRRRSLQQFPRNRAFGVLELNTPNLRSLKMCCYAPGTLRISAPRLEELRSSNN 181
Query: 190 MRRGQWNC 213
+ +W C
Sbjct: 182 VIDMRWQC 189
>04_04_1695 + 35433975-35437040
Length = 1021
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 78 GITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALK 245
G D +++R KG+ K + R+V ++ ++ +L V KDK LK
Sbjct: 308 GALDPYVEVRLGNFKGVTRHLEKNPNPVWRQVFAFSRDHLQSSQLEVVVKDKDVLK 363
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 222 SKDKRALKFLKRRLGTHI 275
S+DKR LKF K LGT I
Sbjct: 285 SEDKRNLKFNKETLGTGI 302
>02_05_0522 - 29744368-29745534
Length = 388
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 115 LAGLILMALSVIPFLPADIFVVLWP 41
+A L+ AL +IP LP+ + WP
Sbjct: 70 VAALLYFALVMIPVLPSGMEFAAWP 94
>02_02_0455 +
10445417-10446931,10447370-10447903,10448198-10448278,
10448699-10448770,10449643-10449669
Length = 742
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 120 KGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALKFLKRR 260
K ++ + S F D RE+ GR ++ MELL V K+ + ++R
Sbjct: 162 KTLRPETSSFPSD--REIYGRDNELEKVMELLSVPKNYTGVHSKRKR 206
>02_01_0404 - 2945611-2948802
Length = 1063
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -2
Query: 286 LFARMCVPRRRFKNLRARLSFDTLSNSIALFSYC 185
LF MC+ R F LS N + L+ YC
Sbjct: 808 LFGEMCLMEREFTAEVEALSMAQHDNLVPLWGYC 841
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,051,693
Number of Sequences: 37544
Number of extensions: 144262
Number of successful extensions: 344
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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