Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N05
(287 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. 108 3e-24
BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 p... 108 3e-24
BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 p... 108 3e-24
BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 p... 108 3e-24
AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 p... 108 3e-24
AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36 p... 50 1e-06
X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein. 29 2.1
U35637-1|AAB02622.1| 3007|Homo sapiens nebulin protein. 29 2.1
BC071958-1|AAH71958.1| 516|Homo sapiens nucleolar complex assoc... 29 2.1
BC007893-1|AAH07893.2| 494|Homo sapiens NOC4L protein protein. 29 2.1
BC001191-1|AAH01191.1| 516|Homo sapiens nucleolar complex assoc... 29 2.1
AK074489-1|BAC11020.1| 344|Homo sapiens protein ( Homo sapiens ... 29 2.1
AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein. 29 2.1
X87241-1|CAA60685.1| 4590|Homo sapiens homologue of Drosophila F... 28 6.3
AY393106-1|AAS86042.1| 153|Homo sapiens immunoglobulin heavy ch... 28 6.3
BC070071-1|AAH70071.1| 1271|Homo sapiens RBM16 protein protein. 27 8.3
BC008833-1|AAH08833.1| 425|Homo sapiens coiled-coil domain cont... 27 8.3
AL591499-2|CAH70694.1| 1271|Homo sapiens RNA binding motif prote... 27 8.3
AL136976-1|CAI21482.1| 1271|Homo sapiens RNA binding motif prote... 27 8.3
AL121952-2|CAI21474.1| 1271|Homo sapiens RNA binding motif prote... 27 8.3
AK000298-1|BAA91065.1| 425|Homo sapiens protein ( Homo sapiens ... 27 8.3
AF041853-1|AAC72294.1| 702|Homo sapiens kinesin family member p... 27 8.3
AB029039-1|BAA83068.2| 1330|Homo sapiens KIAA1116 protein protein. 27 8.3
>CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein.
Length = 105
Score = 108 bits (260), Expect = 3e-24
Identities = 56/92 (60%), Positives = 68/92 (73%)
Frame = +3
Query: 12 RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQY 191
R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G A Y
Sbjct: 4 RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53
Query: 192 EKRAMELLKVSKDKRALKFLKRRLGTHIRAKR 287
E+RAMELLKVSKDKRALKF+K+R+GTHIRAKR
Sbjct: 54 ERRAMELLKVSKDKRALKFIKKRVGTHIRAKR 85
>BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 108 bits (260), Expect = 3e-24
Identities = 56/92 (60%), Positives = 68/92 (73%)
Frame = +3
Query: 12 RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQY 191
R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G A Y
Sbjct: 4 RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53
Query: 192 EKRAMELLKVSKDKRALKFLKRRLGTHIRAKR 287
E+RAMELLKVSKDKRALKF+K+R+GTHIRAKR
Sbjct: 54 ERRAMELLKVSKDKRALKFIKKRVGTHIRAKR 85
>BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 108 bits (260), Expect = 3e-24
Identities = 56/92 (60%), Positives = 68/92 (73%)
Frame = +3
Query: 12 RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQY 191
R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G A Y
Sbjct: 4 RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53
Query: 192 EKRAMELLKVSKDKRALKFLKRRLGTHIRAKR 287
E+RAMELLKVSKDKRALKF+K+R+GTHIRAKR
Sbjct: 54 ERRAMELLKVSKDKRALKFIKKRVGTHIRAKR 85
>BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 108 bits (260), Expect = 3e-24
Identities = 56/92 (60%), Positives = 68/92 (73%)
Frame = +3
Query: 12 RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQY 191
R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G A Y
Sbjct: 4 RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53
Query: 192 EKRAMELLKVSKDKRALKFLKRRLGTHIRAKR 287
E+RAMELLKVSKDKRALKF+K+R+GTHIRAKR
Sbjct: 54 ERRAMELLKVSKDKRALKFIKKRVGTHIRAKR 85
>AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 108 bits (260), Expect = 3e-24
Identities = 56/92 (60%), Positives = 68/92 (73%)
Frame = +3
Query: 12 RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQY 191
R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G A Y
Sbjct: 4 RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53
Query: 192 EKRAMELLKVSKDKRALKFLKRRLGTHIRAKR 287
E+RAMELLKVSKDKRALKF+K+R+GTHIRAKR
Sbjct: 54 ERRAMELLKVSKDKRALKFIKKRVGTHIRAKR 85
>AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36
protein.
Length = 32
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +3
Query: 213 LKVSKDKRALKFLKRRLGTHIRAKR 287
LKVSKDKRALKF+K+R+GTHIRAKR
Sbjct: 1 LKVSKDKRALKFIKKRVGTHIRAKR 25
>X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein.
Length = 6669
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 93 AIKIRPARLKGIQT---KHSKFVRDLVREVVGRAQYEK 197
A K RP G QT KH+K V+D+V E + QYEK
Sbjct: 5200 ATKERPHHHAGNQTTALKHAKDVKDMVSEKKYKIQYEK 5237
>U35637-1|AAB02622.1| 3007|Homo sapiens nebulin protein.
Length = 3007
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 93 AIKIRPARLKGIQT---KHSKFVRDLVREVVGRAQYEK 197
A K RP G QT KH+K V+D+V E + QYEK
Sbjct: 1631 ATKERPHHHAGNQTTALKHAKDVKDMVSEKKYKIQYEK 1668
>BC071958-1|AAH71958.1| 516|Homo sapiens nucleolar complex
associated 4 homolog (S. cerevisiae) protein.
Length = 516
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +1
Query: 100 KLGQL-G*RAFKPNTLSLSAIW-FVKLLGAHSMRRGQW 207
+LG+L G +F+ L+LSA+ FV+L GAH + + +W
Sbjct: 102 RLGELLGHPSFQVKELALSALLKFVQLEGAHPLEKSKW 139
>BC007893-1|AAH07893.2| 494|Homo sapiens NOC4L protein protein.
Length = 494
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +1
Query: 100 KLGQL-G*RAFKPNTLSLSAIW-FVKLLGAHSMRRGQW 207
+LG+L G +F+ L+LSA+ FV+L GAH + + +W
Sbjct: 80 RLGELLGHPSFQVKELALSALLKFVQLEGAHPLEKSKW 117
>BC001191-1|AAH01191.1| 516|Homo sapiens nucleolar complex
associated 4 homolog (S. cerevisiae) protein.
Length = 516
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +1
Query: 100 KLGQL-G*RAFKPNTLSLSAIW-FVKLLGAHSMRRGQW 207
+LG+L G +F+ L+LSA+ FV+L GAH + + +W
Sbjct: 102 RLGELLGHPSFQVKELALSALLKFVQLEGAHPLEKSKW 139
>AK074489-1|BAC11020.1| 344|Homo sapiens protein ( Homo sapiens
cDNA FLJ90008 fis, clone HEMBA1000275. ).
Length = 344
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +1
Query: 100 KLGQL-G*RAFKPNTLSLSAIW-FVKLLGAHSMRRGQW 207
+LG+L G +F+ L+LSA+ FV+L GAH + + +W
Sbjct: 102 RLGELLGHPSFQVKELALSALLKFVQLEGAHPLEKSKW 139
>AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein.
Length = 2802
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 93 AIKIRPARLKGIQT---KHSKFVRDLVREVVGRAQYEK 197
A K RP G QT KH+K V+D+V E + QYEK
Sbjct: 1333 ATKERPHHHAGNQTTALKHAKDVKDMVSEKKYKIQYEK 1370
>X87241-1|CAA60685.1| 4590|Homo sapiens homologue of Drosophila Fat
protein protein.
Length = 4590
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 107 PNFNGFVCNTLFASGYLCRFVA-FSQTNCDFKSGP 6
P NG VCN A GY C+ A + T+C+ P
Sbjct: 4023 PCQNGGVCNPSPAGGYYCKCSALYIGTHCEISVNP 4057
>AY393106-1|AAS86042.1| 153|Homo sapiens immunoglobulin heavy chain
protein.
Length = 153
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 238 ARLSFDTLSNSIALFSYCARPTTSRTKSRTNLE 140
A + +L + YCARP+ ++++SRT L+
Sbjct: 75 AYMELSSLRSEDTAVYYCARPSHTKSRSRTTLD 107
>BC070071-1|AAH70071.1| 1271|Homo sapiens RBM16 protein protein.
Length = 1271
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 57 KISAGKKGITDKAIKIRPARLKGIQTKHSKF 149
K+S+G I K IKI A KG++T++ +F
Sbjct: 531 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 561
>BC008833-1|AAH08833.1| 425|Homo sapiens coiled-coil domain
containing 49 protein.
Length = 425
Score = 27.5 bits (58), Expect = 8.3
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +3
Query: 66 AGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALK 245
+G + D A KIR L I+ K + REV+ K+ ELL++S +K+ K
Sbjct: 122 SGANSLLDMASKIREDPLFIIRKKEE----EKKREVLNNPVKMKKIKELLQMSLEKKEKK 177
Query: 246 FLKRRLGTHIRAK 284
K + H + K
Sbjct: 178 KKKEKKKKHKKHK 190
>AL591499-2|CAH70694.1| 1271|Homo sapiens RNA binding motif protein
16 protein.
Length = 1271
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 57 KISAGKKGITDKAIKIRPARLKGIQTKHSKF 149
K+S+G I K IKI A KG++T++ +F
Sbjct: 531 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 561
>AL136976-1|CAI21482.1| 1271|Homo sapiens RNA binding motif protein
16 protein.
Length = 1271
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 57 KISAGKKGITDKAIKIRPARLKGIQTKHSKF 149
K+S+G I K IKI A KG++T++ +F
Sbjct: 531 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 561
>AL121952-2|CAI21474.1| 1271|Homo sapiens RNA binding motif protein
16 protein.
Length = 1271
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 57 KISAGKKGITDKAIKIRPARLKGIQTKHSKF 149
K+S+G I K IKI A KG++T++ +F
Sbjct: 531 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 561
>AK000298-1|BAA91065.1| 425|Homo sapiens protein ( Homo sapiens
cDNA FLJ20291 fis, clone HEP04788. ).
Length = 425
Score = 27.5 bits (58), Expect = 8.3
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +3
Query: 66 AGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALK 245
+G + D A KIR L I+ K + REV+ K+ ELL++S +K+ K
Sbjct: 122 SGANSLLDMASKIREDPLFIIRKKEE----EKKREVLNNPVKMKKIKELLQMSLEKKEKK 177
Query: 246 FLKRRLGTHIRAK 284
K + H + K
Sbjct: 178 KKKEKKKKHKKHK 190
>AF041853-1|AAC72294.1| 702|Homo sapiens kinesin family member
protein KIF3A protein.
Length = 702
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 48 KTTKISAGKKGIT-DKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVS 224
K +I GKK ++ DK I+++ + + +K + RA+ EKR +LLK
Sbjct: 406 KKRRIQIGKKKVSPDKMIEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQ 465
Query: 225 KDKRAL 242
++ ++L
Sbjct: 466 QEHQSL 471
>AB029039-1|BAA83068.2| 1330|Homo sapiens KIAA1116 protein protein.
Length = 1330
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 57 KISAGKKGITDKAIKIRPARLKGIQTKHSKF 149
K+S+G I K IKI A KG++T++ +F
Sbjct: 590 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 620
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,152,579
Number of Sequences: 237096
Number of extensions: 770664
Number of successful extensions: 5470
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5465
length of database: 76,859,062
effective HSP length: 72
effective length of database: 59,788,150
effective search space used: 1375127450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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