Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N05
         (287 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    25   0.14 
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    25   0.14 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   3.0  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   4.0  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   4.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   7.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   9.2  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 25.4 bits (53), Expect = 0.14
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 123 GIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALKFLKRRLGTH-IRAKR 287
           G+Q K      D +   +    YEKR+ +   V     + K  + R+G H +R KR
Sbjct: 213 GLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFK--RARMGFHGMRGKR 266


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 25.4 bits (53), Expect = 0.14
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 123 GIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALKFLKRRLGTH-IRAKR 287
           G+Q K      D +   +    YEKR+ +   V     + K  + R+G H +R KR
Sbjct: 213 GLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFK--RARMGFHGMRGKR 266


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 135 KHSKFVRDLVREVVGRAQYEKRAME 209
           K   FV   V EV+   + EKR  E
Sbjct: 517 KKGSFVTQYVGEVITNEEAEKRGKE 541


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 282 SPGCVCR 262
           +PGCVCR
Sbjct: 68  APGCVCR 74


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 282 SPGCVCR 262
           +PGCVCR
Sbjct: 68  APGCVCR 74


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 79  VLQTKPLKLG 108
           V+QTK LKLG
Sbjct: 234 VIQTKSLKLG 243


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 121 RAFKPNTLSLSAIWFVKLLG 180
           + F P+TL +   WF   LG
Sbjct: 205 QTFAPSTLVVMLSWFSFWLG 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,325
Number of Sequences: 438
Number of extensions: 1675
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)