Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N03
(248 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 67 4e-13
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 31 0.017
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 29 0.068
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 29 0.12
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot... 28 0.21
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 0.84
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 24 2.6
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 24 3.4
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 24 3.4
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 24 3.4
SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyros... 23 4.5
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 23 4.5
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 23 4.5
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 23 4.5
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 23 4.5
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 23 5.9
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 23 5.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 23 5.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 23 5.9
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 23 7.8
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch... 23 7.8
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 23 7.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 23 7.8
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 66.9 bits (156), Expect = 4e-13
Identities = 36/71 (50%), Positives = 44/71 (61%)
Frame = +2
Query: 32 FARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTYIRL 211
F RYVE GRV LV+ G GKL +VDI+D RALID P S RQ IR + LT+I +
Sbjct: 4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63
Query: 212 KYPFTAPTRVV 244
K P A + +V
Sbjct: 64 KLPRGARSGIV 74
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 31.5 bits (68), Expect = 0.017
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 190 ELVEANLLPRNTTAGTVNKCACLINDINYANQL 92
E+ E+ LLP + T GTV AC I D + A +L
Sbjct: 951 EMKESGLLPTSVTYGTVINAACRIGDESLAEKL 983
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 29.5 bits (63), Expect = 0.068
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 38 RYVEPGRVALVSDGPLKGKLVGVVDIIDQ 124
+ ++PG+VAL++ G GK V ++ IDQ
Sbjct: 3 KILKPGKVALITRGRFAGKKVVILQAIDQ 31
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 28.7 bits (61), Expect = 0.12
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 38 RYVEPGRVALVSDGPLKGKLVGVVDIIDQ 124
+ ++PG+VALV+ G GK V ++ +DQ
Sbjct: 3 KILKPGKVALVTRGRFAGKKVVILQNVDQ 31
>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 283
Score = 27.9 bits (59), Expect = 0.21
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 156 PLPGPSISARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTSSQEP 7
P+ G SI + S +P N PSET+ P R K +T Q+P
Sbjct: 18 PVWGKSIYGPLRRRFSFSPINVINHSPSETKRRDPVEELRYKPLTPPQDP 67
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 0.84
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +2
Query: 17 EDVMPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALID 142
+D F +Y+ G++ L +D P K +G + ++ D
Sbjct: 15 DDKFEFKKYINEGKLPLKADNPKKKPQLGTIQANQPIPSIFD 56
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 24.2 bits (50), Expect = 2.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 20 DVMPFARYVEPGRVALVSDGPLKGKLVGVVD 112
D + ++PGR+ V DG L ++ VD
Sbjct: 136 DYKNITKVIQPGRIIYVDDGILSFTVIEKVD 166
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 23.8 bits (49), Expect = 3.4
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 8 GSCEDVMPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRAL-IDG 145
G D +PF ++ G V GPLKGK VV+ T + I+G
Sbjct: 57 GKPADRVPFW-HIFKGDYVYVHQGPLKGKWGRVVETNKYTNGITIEG 102
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 23.8 bits (49), Expect = 3.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 144 PSISARV*SMISTTPTNFPFRGPSETRATRP 52
PS++ S ++TT TN P PS+ P
Sbjct: 193 PSVAFSSKSTLATTRTNAPLSRPSQPTKASP 223
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 23.8 bits (49), Expect = 3.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 142 RSRQWCFAATNSPQPTP 192
+S QW +T SP P+P
Sbjct: 152 KSNQWNLVSTQSPLPSP 168
>SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyrosine
protein phosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 156
Score = 23.4 bits (48), Expect = 4.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 5 EGSCEDVMPFARYVEPGRVALVSDGPLKGKLVGVVD 112
+GS VM F Y PG V+ + D P G G D
Sbjct: 105 QGSRAKVMLFGEYASPG-VSKIVDDPYYGGSDGFGD 139
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 23.4 bits (48), Expect = 4.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 150 AVVFRGNKFASTNSI 194
AV+FRGN F S +SI
Sbjct: 5 AVLFRGNSFISFSSI 19
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 23.4 bits (48), Expect = 4.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1
Query: 175 SPQPTPFNIYPPKIPFYSTHTCCQ 246
+P P+N PP IP + T Q
Sbjct: 240 TPSSDPYNSPPPSIPLLGSQTNLQ 263
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 23.4 bits (48), Expect = 4.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 59 VALVSDGPLKGKLVGVV 109
+ + +G L+GKLVG+V
Sbjct: 149 IPITENGKLRGKLVGIV 165
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 23.4 bits (48), Expect = 4.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 56 RVALVSDGPLKGKLVGVVDIIDQTRALID 142
++ + SDG + K +G++DI+ Q L D
Sbjct: 182 QLPVYSDGLQERKFLGILDILQQKMILWD 210
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 23.0 bits (47), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 62 ALVSDGPLKGKLVGVVDIIDQTRALI 139
+L D P G LVGV +DQ RA++
Sbjct: 239 SLGEDHPA-GALVGVTKTLDQARAVL 263
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 23.0 bits (47), Expect = 5.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 83 LKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTYIRL 211
++GKL ++ + ++ R+L+ P + + LH TY+ L
Sbjct: 84 IEGKLEQLMLVYERIRSLVVIPSENLGPLHEAIVNLHSTYMTL 126
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 23.0 bits (47), Expect = 5.9
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -2
Query: 136 KCACLINDINYANQLSF*RSIRNQGDSPWF 47
+C CL+N I+ A + + D WF
Sbjct: 162 ECECLLNVIHTAQHMQIVHKLELNEDLLWF 191
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 23.0 bits (47), Expect = 5.9
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -2
Query: 136 KCACLINDINYANQLSF*RSIRNQGDSPWF 47
+C CL+N I+ A + + D WF
Sbjct: 162 ECECLLNVIHTAQHMQIVHKLELNEDLLWF 191
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 22.6 bits (46), Expect = 7.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 215 ILGGYMLNGVG*GEFVAAKHHCRDR 141
IL G MLNG+G F+ K + D+
Sbjct: 187 ILIGRMLNGIGFTTFLYHKKYTTDK 211
>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 442
Score = 22.6 bits (46), Expect = 7.8
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = -2
Query: 64 GDSPWFYVTCERHDVLT 14
GD+PW Y C + +++
Sbjct: 109 GDAPWLYAGCYFYRIMS 125
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 22.6 bits (46), Expect = 7.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 50 PGRVALVSDGPLKGKLVGVVDIIDQTRALIDGP 148
PG V ++ G +GK V V+ ++ T ++ GP
Sbjct: 54 PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGP 85
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 22.6 bits (46), Expect = 7.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 169 TNSPQPTPFNIYPPK 213
T +P+P+P+ PPK
Sbjct: 619 TTAPKPSPWKSLPPK 633
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,112,942
Number of Sequences: 5004
Number of extensions: 20260
Number of successful extensions: 68
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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