Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N03
(248 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254... 62 8e-11
02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979... 61 1e-10
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445... 27 1.6
09_04_0564 + 18565583-18566449,18569662-18570123 27 1.6
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 27 1.6
04_03_0937 + 20923705-20923833,20924001-20924012,20924413-209244... 26 3.7
02_05_1278 - 35416451-35416458,35416777-35416969,35416970-354170... 26 3.7
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137... 26 3.7
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 26 4.8
01_05_0703 - 24404580-24406373 26 4.8
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 25 6.4
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79... 25 8.5
07_03_0179 + 14801037-14801108,14801325-14802788 25 8.5
05_04_0452 - 21373876-21375531 25 8.5
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 25 8.5
04_01_0273 - 3631903-3632527,3633566-3633742,3633890-3634120,363... 25 8.5
03_04_0202 - 18430330-18430484,18430617-18430756,18431316-18431389 25 8.5
01_06_1077 + 34372486-34372697,34373476-34373547,34373892-343740... 25 8.5
01_05_0610 - 23636097-23638958 25 8.5
>04_04_0506 -
25723809-25724299,25725082-25725237,25725316-25725445,
25726484-25726585,25726630-25726671
Length = 306
Score = 61.7 bits (143), Expect = 8e-11
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Frame = +2
Query: 8 GSCEDVMP-----FARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQ 172
GSC +++P F R+VE GRVALV+ G G+LV +VD++DQ RAL+D P + R Q
Sbjct: 3 GSCREILPVVSSPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQ 60
Query: 173 IRLNQLHLTYIRL 211
I +L LT I++
Sbjct: 61 INFKRLSLTDIKI 73
>02_04_0659 -
24797477-24797533,24797614-24797726,24797814-24797943,
24798727-24798828,24798951-24798953
Length = 134
Score = 60.9 bits (141), Expect = 1e-10
Identities = 32/62 (51%), Positives = 43/62 (69%)
Frame = +2
Query: 26 MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTYI 205
MPF R+VE GRVALV+ G G+LV +VD++DQ RAL+D P + R QI +L LT I
Sbjct: 1 MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDI 58
Query: 206 RL 211
++
Sbjct: 59 KI 60
>12_01_0551 +
4446937-4447353,4449141-4450013,4451206-4451244,
4452339-4452581
Length = 523
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 243 TTRVGAVKGYFRRIYVKWSWLRR 175
T+R+G + +FR + V + WLRR
Sbjct: 356 TSRLGIFEAWFRPLLVDFGWLRR 378
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 148 RQWCFAATNSPQPTPFNIY-PPKIPFYST 231
R++CF+ SP P+P Y PF+ T
Sbjct: 15 RRYCFSTPPSPSPSPAGAYSSSSFPFFPT 43
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 50 PGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGS 154
P VA +DG L ++G V ID L D PG+
Sbjct: 1159 PSTVAESTDGDLDNDMLGTVKSIDWNDELNDDPGA 1193
>04_03_0937 +
20923705-20923833,20924001-20924012,20924413-20924473,
20924523-20924749,20924859-20925104,20925645-20925657,
20927681-20928302,20928320-20928949,20928960-20929224
Length = 734
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 145 SRQWCFAATNSPQPTPFNIYPPKIPFYSTH 234
+ +W + +T+SP P PF +I Y+ H
Sbjct: 510 TERWSWGSTSSPPPPPFGGGRRRITGYALH 539
>02_05_1278 -
35416451-35416458,35416777-35416969,35416970-35417056,
35417851-35417892,35418542-35418617,35418954-35421589
Length = 1013
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 190 ELVEANLLPRNTTAGTVNKCACLINDINYANQLSF*RSIRNQGDSP 53
EL++ N+LP C C++ A SF +RN G P
Sbjct: 544 ELMDRNMLPDAVVYNVFINCLCMLGKFKEAK--SFLTEMRNMGLKP 587
>02_04_0490 -
23411742-23412944,23413071-23413595,23413666-23413747,
23413841-23414050,23414371-23414523,23415335-23415447,
23415476-23415622
Length = 810
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 187 LVEANLLPRNTTAGTVNKCACLINDINYANQLSF*RSIRNQGD 59
LVE +P +A N C ++DIN+ +++ + +R Q D
Sbjct: 134 LVETRKVPEPNSAN--NACNSCLDDINWEDEIKYDPGLRKQID 174
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 163 AATNSPQPTPFNIYPP 210
A TN P P P+ ++PP
Sbjct: 456 AITNDPNPPPYPLFPP 471
>01_05_0703 - 24404580-24406373
Length = 597
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 38 RYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGV 160
R+V RV VS G + +GV + D L+D P SG+
Sbjct: 164 RHVAGSRVGRVSGGERRRVSIGVDLVHDPAVLLLDEPTSGL 204
>03_06_0003 + 30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 26 MPFARYVEPGRVALVSDGPLKGKLVGV--VDIIDQTRALIDGPG 151
+PF + ++ +ALVSD + L G D ++ R L G G
Sbjct: 1232 IPFLKAIDISPLALVSDSVVGNGLAGSNRTDALEAVRELFSGDG 1275
>08_01_0107 -
789217-789984,790070-790219,790303-790890,790968-791093
Length = 543
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 148 RQWCFAATNSPQPTPFNIYPPK 213
R+W F ++SP P P PP+
Sbjct: 48 RRWLFRKSSSPSPAPPTPPPPQ 69
>07_03_0179 + 14801037-14801108,14801325-14802788
Length = 511
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 163 AATNSPQPTPFNIYPPKIPF 222
+++ S +P I+PPKIPF
Sbjct: 128 SSSQSQEPEEEEIHPPKIPF 147
>05_04_0452 - 21373876-21375531
Length = 551
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 52 WFYVTCERHDVLTRT 8
W Y C+RH +LT T
Sbjct: 272 WIYAYCKRHGMLTST 286
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 157 CFAATNSPQPTPFNIYPPKIPFY 225
C A+ P P P I+PP+ FY
Sbjct: 167 CGASCKPPPPPPPAIWPPQPSFY 189
>04_01_0273 -
3631903-3632527,3633566-3633742,3633890-3634120,
3634431-3634636
Length = 412
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 20 DVMPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVS 163
DV+P R R SDG +G L+ + D + LI GPG V+
Sbjct: 94 DVIPGQRKSRRAR-GQSSDGDAEGLLLEAHLLFDICKRLIKGPGVAVA 140
>03_04_0202 - 18430330-18430484,18430617-18430756,18431316-18431389
Length = 122
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 125 TRALIDGPGSGVSRQQIRLNQLHLTYIRLKYPF 223
TRA+ID + S+++ ++QLH +Y P+
Sbjct: 10 TRAIIDEVNNSNSQRRHHIHQLHASYSFTHSPY 42
>01_06_1077 +
34372486-34372697,34373476-34373547,34373892-34374059,
34374477-34374548,34374628-34374699,34375954-34376023
Length = 221
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2
Query: 52 WFYVTCERHDVLTR 11
WF+VTC+R + +TR
Sbjct: 57 WFHVTCDRDNRVTR 70
>01_05_0610 - 23636097-23638958
Length = 953
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -2
Query: 202 IC*MELVEANLLPRNTTAGTVNKCACLINDINYANQLSF*RSIRN---QGDSPWFYVTCE 32
+C M+ +E + RN G ++ CA + NY S+R G P F+ C+
Sbjct: 579 LCKMQSLELLDISRNKITGPISDCAIDSSSANYTCTNIINISLRKNNLSGQFPSFFKNCK 638
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,615,237
Number of Sequences: 37544
Number of extensions: 145803
Number of successful extensions: 411
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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