Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N03
(248 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 54 1e-08
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 30 0.19
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 29 0.44
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 29 0.44
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 25 7.1
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 25 7.1
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 25 7.1
U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin ... 25 9.4
AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical... 25 9.4
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 54.0 bits (124), Expect = 1e-08
Identities = 30/74 (40%), Positives = 40/74 (54%)
Frame = +2
Query: 26 MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTYI 205
M F R V+ GRV ++ G +GKL +V++ID R IDGP S V+R L L LT
Sbjct: 1 MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60
Query: 206 RLKYPFTAPTRVVR 247
LK T+ V+
Sbjct: 61 VLKLRVGQRTKGVK 74
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 30.3 bits (65), Expect = 0.19
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 147 GPSISARV*---SMISTTPTNFPFRGPSETRATRPGS 46
GPS S+ V SMI+TTP PF P+ + PGS
Sbjct: 374 GPSTSSHVTPQMSMINTTPQQPPFSHPNSQQQATPGS 410
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 29.1 bits (62), Expect = 0.44
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 150 PGPSISARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTSSQEP 7
PGPS +++ S I TPT P + A +P + G+ +SQ+P
Sbjct: 1434 PGPSSASKSVSSIRQTPTK--VLDPLSSAAKQPNEPDQTTGLKTSQQP 1479
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 29.1 bits (62), Expect = 0.44
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 150 PGPSISARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTSSQEP 7
PGPS +++ S I TPT P + A +P + G+ +SQ+P
Sbjct: 1434 PGPSSASKSVSSIRQTPTK--VLDPLSSAAKQPNEPDQTTGLKTSQQP 1479
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = -2
Query: 106 YANQL--SF*RSIRNQGDSP 53
Y+NQL +F +SI NQGD+P
Sbjct: 1608 YSNQLGKNFFKSIPNQGDTP 1627
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = -2
Query: 106 YANQL--SF*RSIRNQGDSP 53
Y+NQL +F +SI NQGD+P
Sbjct: 1608 YSNQLGKNFFKSIPNQGDTP 1627
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = -2
Query: 106 YANQL--SF*RSIRNQGDSP 53
Y+NQL +F +SI NQGD+P
Sbjct: 238 YSNQLGKNFFKSIPNQGDTP 257
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 25.0 bits (52), Expect = 7.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -3
Query: 159 TPLPGPSISARV*SMIST-TPTNFPFRGPSETRATRPGST*RAKGMTSSQ 13
T P+ +A++ S T T T PS T PG + + GMT+SQ
Sbjct: 386 TTTGNPTTTAQLSSSSKTLTSTQTTQGSPSTVSQTTPGVSSASTGMTTSQ 435
>U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin
protein 2 protein.
Length = 195
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 122 QTRALIDGPGSGVSRQQIRLNQLHLTYIRLKYPFTAPTRVV 244
+T+A++DG VS + + L + L + F PT ++
Sbjct: 14 KTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEII 54
>AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical
protein Y87G2A.13 protein.
Length = 468
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = -3
Query: 246 LTTRVGAVKGYFRRIYVKWSWLRRICCRETPLPGPSISARV*SMISTTPTNFPFRG 79
+ G VK Y + + + + R +CC GP++ A + +++ T N + G
Sbjct: 347 MRAEAGKVKNYTIQAMI-YRYYRYLCCAALQYFGPAVLALLFALLLKTTGNLSWIG 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,295,614
Number of Sequences: 27780
Number of extensions: 121193
Number of successful extensions: 280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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