Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M24
         (188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    24   3.0  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    23   5.3  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    22   9.3  

>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +2

Query: 44  YLLARQI---KMVL*ITIYLNALFKIQRGNKVFLVPSRND 154
           Y L++++   K++  IT++LNA       N+V ++ S +D
Sbjct: 38  YSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSD 77


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 113 QRGNKVFLVPSRNDTFVQWGI 175
           Q  NK++ + S+ + FV W I
Sbjct: 535 QLKNKIYYILSKGNYFVDWSI 555


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 69  WYYR*LSTSMHCLKFKEVTK 128
           W +  LST +HC  +   TK
Sbjct: 128 WLFGFLSTGVHCTMYIPATK 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,156
Number of Sequences: 5004
Number of extensions: 9680
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)