Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M23
(351 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 80 1e-16
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 67 6e-13
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 63 1e-11
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 31 0.052
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 27 0.85
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 27 1.1
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 25 2.6
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 2.6
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 25 3.4
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 25 4.5
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 24 6.0
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 24 6.0
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 24 6.0
SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces po... 24 6.0
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 24 6.0
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 24 7.9
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 24 7.9
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 24 7.9
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 79.8 bits (188), Expect = 1e-16
Identities = 38/73 (52%), Positives = 52/73 (71%)
Frame = +1
Query: 19 EDDRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLE 198
E+DRK+ LQ+AIVRIMK R+ L+H L++E + Q + F P V+ IK+CI+ LI+K+YLE
Sbjct: 697 EEDRKLLLQSAIVRIMKARRTLKHVVLVKETIDQIKSRFTPKVSDIKQCIDMLIEKEYLE 756
Query: 199 RAVGTLDTYSYLA 237
R D Y YLA
Sbjct: 757 RQ--GRDEYIYLA 767
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 67.3 bits (157), Expect = 6e-13
Identities = 34/73 (46%), Positives = 44/73 (60%)
Frame = +1
Query: 19 EDDRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLE 198
++ RK A IVR+MK RKV H +L+ EV Q F PS MIK+ IEALI+++YL+
Sbjct: 713 DESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQ 772
Query: 199 RAVGTLDTYSYLA 237
R Y YLA
Sbjct: 773 RQADNGRIYEYLA 785
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 62.9 bits (146), Expect = 1e-11
Identities = 28/67 (41%), Positives = 46/67 (68%)
Frame = +1
Query: 25 DRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLERA 204
DR+ LQA+IVR+MKQ++ ++H +L+Q V++ + P V+ +K IE L++K+YLER
Sbjct: 666 DRQFELQASIVRVMKQKEKMKHDDLVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLERE 725
Query: 205 VGTLDTY 225
+ TY
Sbjct: 726 DNDIYTY 732
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 31.1 bits (67), Expect = 0.052
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 128 PRACDTTSWISSACRSTFLCFMMRTMAACRYIFL 27
P+ + W + AC S C +M + C Y+F+
Sbjct: 549 PKPTGASQWAAVACTSVVSCIIMAAASLCEYLFV 582
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 27.1 bits (57), Expect = 0.85
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +3
Query: 231 PCVTMHASGPTSCIRIRTNNCARIRSNNCARIRTDSCI 344
PC + + G + +R+R N + N C ++ ++CI
Sbjct: 183 PCEMIKSLGKSELLRLRYMNYPELLVNQCEKLVINACI 220
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 1.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 74 LCFMMRTMAACRYIFLSSSQCA 9
+C+M++ + RY FL SSQ A
Sbjct: 120 ICYMLKATISKRYAFLGSSQSA 141
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -1
Query: 264 SSVRMRA*LRKVGVGVECADGSLEVLLVDERFDTFLD 154
+SV++ +K+GV + + +L L++DER + +D
Sbjct: 369 TSVKLSLLAKKLGVSISIIEQALVGLIIDERVNGKID 405
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 2.6
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 231 VGVGVECADGSLEVLLVDERFDTFLDHSDGGSERAARL 118
V GVE +GS E+ L E D D D E+ A L
Sbjct: 561 VASGVESDEGSEEISLDSEYSDILSDDGDFEKEKQATL 598
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 3.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 329 PDTCAVVAPDACAIVGPDAYAARRSGCVH 243
PD C +VA +C I G S CVH
Sbjct: 266 PD-CLIVAGTSCKIPGVKRIIKEMSNCVH 293
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -2
Query: 128 PRACDTTSWISSACRSTFLCF 66
P A TT W S C ++CF
Sbjct: 275 PVAVATTFWFQSICLILYICF 295
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 24.2 bits (50), Expect = 6.0
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -2
Query: 104 WISSACRSTFLCFMMRTMAACRYIFLSSS 18
W SS +T CF R A Y SSS
Sbjct: 410 WFSSHATNTEQCFTKRLTATFGYSLFSSS 438
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 24.2 bits (50), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 270 CSSSVRMRA*LRKVGVGVECAD-GSLEVLL 184
C+ ++ A L K G G +CA G LE +L
Sbjct: 99 CNPDPKVLALLNKFGTGFDCASKGELEQIL 128
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -1
Query: 213 CADGSLEVLLVDERFDTFLDHSDGGSERAARLRHHLLDQLRV 88
C +GS+ LL + F+D +D + + L+D++ +
Sbjct: 1239 CTEGSINALLNSKCLPEFIDAADENTTPTGMNIYELIDRMNL 1280
>SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 24.2 bits (50), Expect = 6.0
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 347 AYAAVG-PDTCAVVAPDACAIVGPDAYAARRSGCVHS 240
AY+A PD + +A +A VGP Y R V S
Sbjct: 26 AYSACNRPDKISGIAKEAMEHVGPSIYPKLREALVKS 62
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 24.2 bits (50), Expect = 6.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 139 PSVAMIKKCIEALIDKQYLERAVGT 213
PS ++IKKC E L + + RAV T
Sbjct: 241 PSDSIIKKCEETLQGCKLISRAVKT 265
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 180 RQAVPRASRRHTRHLLLPCVTMHASGPTS 266
R PR SR HT H + +T P+S
Sbjct: 247 RNGKPRISRLHTSHASIDGLTDFIQSPSS 275
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 183 QAVPRASRRHTRHLLLPCVTMHASGPTSCIRIRT 284
Q +P A R H LLL ++ + T + +RT
Sbjct: 574 QKIPEAYRTHLFFLLLDTKPVYKASSTLIVHLRT 607
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 84 QHLPLLHDAHYGRLQVHLPVVL 19
QHLPL+H YG + + + ++
Sbjct: 655 QHLPLIHPNIYGEVVIEVENII 676
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,221,609
Number of Sequences: 5004
Number of extensions: 21313
Number of successful extensions: 91
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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