Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M23
(351 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 83 7e-17
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 83 7e-17
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 79 7e-16
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 79 7e-16
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 79 7e-16
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 79 7e-16
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 79 7e-16
Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical pr... 77 4e-15
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 73 8e-14
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 73 8e-14
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 59 8e-10
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 59 8e-10
Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical pr... 50 4e-07
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 31 0.23
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 31 0.31
Z83129-6|CAB63324.1| 101|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 28 1.6
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 1.6
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 1.6
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 1.6
U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna bind... 27 3.8
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 27 3.8
AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical... 27 5.0
U50311-8|AAA92312.1| 145|Caenorhabditis elegans Hypothetical pr... 26 6.6
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 26 6.6
Z50794-6|CAA90659.2| 388|Caenorhabditis elegans Hypothetical pr... 26 8.7
U58742-4|AAB36856.1| 242|Caenorhabditis elegans Activated in bl... 26 8.7
U53141-8|AAA96110.3| 572|Caenorhabditis elegans Prion-like-(q/n... 26 8.7
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical
protein D2045.6 protein.
Length = 780
Score = 82.6 bits (195), Expect = 7e-17
Identities = 38/73 (52%), Positives = 51/73 (69%)
Frame = +1
Query: 19 EDDRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLE 198
E+DRK + A IVRIMK RK ++H +L+ EV++Q G F P V MIK+CI +LI+K+Y+
Sbjct: 708 EEDRKSVISACIVRIMKTRKRVQHQQLMTEVITQLSGRFKPKVEMIKRCIGSLIEKEYML 767
Query: 199 RAVGTLDTYSYLA 237
R G D Y YLA
Sbjct: 768 RTEGQKDLYEYLA 780
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 82.6 bits (195), Expect = 7e-17
Identities = 38/73 (52%), Positives = 51/73 (69%)
Frame = +1
Query: 19 EDDRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLE 198
E+DRK + A IVRIMK RK ++H +L+ EV++Q G F P V MIK+CI +LI+K+Y+
Sbjct: 708 EEDRKSVISACIVRIMKTRKRVQHQQLMTEVITQLSGRFKPKVEMIKRCIGSLIEKEYML 767
Query: 199 RAVGTLDTYSYLA 237
R G D Y YLA
Sbjct: 768 RTEGQKDLYEYLA 780
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical
protein ZK520.4d protein.
Length = 743
Score = 79.4 bits (187), Expect = 7e-16
Identities = 38/71 (53%), Positives = 49/71 (69%)
Frame = +1
Query: 25 DRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLERA 204
DRK Y++ AIVRIMK RKVL+H L+ E++ Q +G F+P V IKK IE LI+K Y++R
Sbjct: 674 DRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQR- 732
Query: 205 VGTLDTYSYLA 237
D Y YLA
Sbjct: 733 TDQNDEYQYLA 743
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 79.4 bits (187), Expect = 7e-16
Identities = 38/71 (53%), Positives = 49/71 (69%)
Frame = +1
Query: 25 DRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLERA 204
DRK Y++ AIVRIMK RKVL+H L+ E++ Q +G F+P V IKK IE LI+K Y++R
Sbjct: 722 DRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQR- 780
Query: 205 VGTLDTYSYLA 237
D Y YLA
Sbjct: 781 TDQNDEYQYLA 791
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 79.4 bits (187), Expect = 7e-16
Identities = 38/71 (53%), Positives = 49/71 (69%)
Frame = +1
Query: 25 DRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLERA 204
DRK Y++ AIVRIMK RKVL+H L+ E++ Q +G F+P V IKK IE LI+K Y++R
Sbjct: 705 DRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQR- 763
Query: 205 VGTLDTYSYLA 237
D Y YLA
Sbjct: 764 TDQNDEYQYLA 774
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 79.4 bits (187), Expect = 7e-16
Identities = 38/71 (53%), Positives = 49/71 (69%)
Frame = +1
Query: 25 DRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLERA 204
DRK Y++ AIVRIMK RKVL+H L+ E++ Q +G F+P V IKK IE LI+K Y++R
Sbjct: 781 DRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQR- 839
Query: 205 VGTLDTYSYLA 237
D Y YLA
Sbjct: 840 TDQNDEYQYLA 850
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 79.4 bits (187), Expect = 7e-16
Identities = 38/71 (53%), Positives = 49/71 (69%)
Frame = +1
Query: 25 DRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLERA 204
DRK Y++ AIVRIMK RKVL+H L+ E++ Q +G F+P V IKK IE LI+K Y++R
Sbjct: 674 DRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQR- 732
Query: 205 VGTLDTYSYLA 237
D Y YLA
Sbjct: 733 TDQNDEYQYLA 743
>Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical
protein K08E7.7 protein.
Length = 729
Score = 77.0 bits (181), Expect = 4e-15
Identities = 37/73 (50%), Positives = 48/73 (65%)
Frame = +1
Query: 19 EDDRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLE 198
E DRK ++A IVRIMK RK L H LI E++SQ + F P+V MIK CIE LI++ Y+
Sbjct: 657 ESDRKYEIKACIVRIMKTRKSLTHTLLINEIISQLKSRFTPNVQMIKICIEILIEQLYIR 716
Query: 199 RAVGTLDTYSYLA 237
R+ + Y YLA
Sbjct: 717 RSENEHNVYEYLA 729
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 72.5 bits (170), Expect = 8e-14
Identities = 37/73 (50%), Positives = 47/73 (64%)
Frame = +1
Query: 19 EDDRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLE 198
EDDRK+ ++AAIVRIMK RK L H L+ EV Q R F PS +IK+ IE LI+++YL
Sbjct: 708 EDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLA 767
Query: 199 RAVGTLDTYSYLA 237
R Y Y+A
Sbjct: 768 RDEHDHRAYQYIA 780
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 72.5 bits (170), Expect = 8e-14
Identities = 37/73 (50%), Positives = 47/73 (64%)
Frame = +1
Query: 19 EDDRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLE 198
EDDRK+ ++AAIVRIMK RK L H L+ EV Q R F PS +IK+ IE LI+++YL
Sbjct: 705 EDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLA 764
Query: 199 RAVGTLDTYSYLA 237
R Y Y+A
Sbjct: 765 RDEHDHRAYQYIA 777
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 59.3 bits (137), Expect = 8e-10
Identities = 31/71 (43%), Positives = 46/71 (64%)
Frame = +1
Query: 25 DRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLERA 204
DR+ + AA+VRIMK RK L H L+ E++ Q R F S A IKK +E+LI+++Y+ R
Sbjct: 735 DRQYKIDAAVVRIMKARKQLNHQTLMTELLQQLR--FPVSTADIKKRLESLIEREYISRD 792
Query: 205 VGTLDTYSYLA 237
+Y+Y+A
Sbjct: 793 PEEASSYNYVA 803
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 59.3 bits (137), Expect = 8e-10
Identities = 31/71 (43%), Positives = 46/71 (64%)
Frame = +1
Query: 25 DRKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLERA 204
DR+ + AA+VRIMK RK L H L+ E++ Q R F S A IKK +E+LI+++Y+ R
Sbjct: 772 DRQYKIDAAVVRIMKARKQLNHQTLMTELLQQLR--FPVSTADIKKRLESLIEREYISRD 829
Query: 205 VGTLDTYSYLA 237
+Y+Y+A
Sbjct: 830 PEEASSYNYVA 840
>Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical
protein ZK856.1 protein.
Length = 765
Score = 50.4 bits (115), Expect = 4e-07
Identities = 24/70 (34%), Positives = 44/70 (62%)
Frame = +1
Query: 28 RKMYLQAAIVRIMKQRKVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLERAV 207
R++ +Q IV+I+K RK A+L E+V + F P+ +IK+ I+ LI+ +Y+ER
Sbjct: 696 RELRVQEGIVKILKTRKTYTLAQLTMELVEILKPLFIPNRKIIKEQIDWLIENKYMERRA 755
Query: 208 GTLDTYSYLA 237
++T+ Y++
Sbjct: 756 DDINTFVYIS 765
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -1
Query: 348 CVCSCRSGYVRSCCSGCVRNCWSGCV-CSSSVRMRA*LRKVGV 223
C C+ R CC GC C GC C R R L+K+ +
Sbjct: 89 CCCTRCCTCCRPCCCGCGCGCGCGCCGCGGGGRKRRSLQKLRI 131
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 348 CVCSCRSGYVRSCCSGCVRNCWSGCVC 268
C C CR+ CC+ C R C GC C
Sbjct: 83 CTC-CRTCCCTRCCT-CCRPCCCGCGC 107
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 30.7 bits (66), Expect = 0.31
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 345 VCSCRSGYVRSCCSGCVRNCW 283
VC+C+SGY C C +N W
Sbjct: 971 VCNCKSGYQGERCGECAQNHW 991
>Z83129-6|CAB63324.1| 101|Caenorhabditis elegans Hypothetical
protein W06G6.10 protein.
Length = 101
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 348 CVCSCRSGYVRSCCSGCVRNCWSGCV 271
C CSC G +R C NC +GCV
Sbjct: 71 CCCSCMHGVLRFFAELCC-NCCAGCV 95
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -1
Query: 348 CVCSCRSGYVRSCCSGCVRNCWSGCV-CSSSVRMRA*LRKVGV 223
C C+ R CC GC C GC C R R L+ + +
Sbjct: 107 CCCTRCCTCCRPCCCGCGCGCGCGCCGCGGGGRKRRSLQTLKI 149
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = -1
Query: 351 GCVCSCRSGYVRSCCSGCVRNCWSGCVCSSSVRMRA*LRKVGVGVECADG 202
GC C C R CC C R C + C R R G C G
Sbjct: 81 GCGCGCCCCRPRCCC--CCRRCCTCCRTCCCTRCCTCCRPCCCGCGCGCG 128
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 348 CVCSCRSGYVRSCCSGCVRNCWSGCVC 268
C C CR+ CC+ C R C GC C
Sbjct: 99 CTC-CRTCCCTRCCT-CCRPCCCGCGC 123
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 348 CVCSCRSGYVRSCCSGCVRNCWSGCVC 268
C C CR+ CC+ C R C GC C
Sbjct: 85 CTC-CRTCCCTRCCT-CCRPCCCGCGC 109
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 348 CVCSCRSGYVRSCCSGCVRNCWSGCVC 268
C C CR+ CC+ C R C GC C
Sbjct: 88 CTC-CRTCCCTRCCT-CCRPCCCGCGC 112
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 348 CVCSCRSGYVRSCCSGCVRNCWSGCVC 268
C C CR+ CC+ C R C GC C
Sbjct: 100 CTC-CRTCCCTRCCT-CCRPCCCGCGC 124
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 348 CVCSCRSGYVRSCCSGCVRNCWSGCVC 268
C C CR+ CC+ C R C GC C
Sbjct: 100 CTC-CRTCCCTRCCT-CCRPCCCGCGC 124
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 348 CVCSCRSGYVRSCCSGCVRNCWSGCVC 268
C C CR+ CC+ C R C GC C
Sbjct: 101 CTC-CRTCCCTRCCT-CCRPCCCGCGC 125
>U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna binding
factor protein 2 protein.
Length = 632
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 198 LEVL--LVDERFDTFLDHSDGGSERAARLRHHLLDQLRVPQHLPLLHDAHYGRLQ 40
LE+L ++DE FD ++ H D G + + H V L + DA GR Q
Sbjct: 465 LELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQ 519
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 330 SGYVRSCCSGCVRNCWSGCVCSSSVRMRA*LRKVGVG--VEC-ADGSLEVLLVDERF 169
+G + C GCV+ C S + + L+K+G ++C DGS E + D F
Sbjct: 821 AGVAKCCDDGCVKACAYPLQTSKCLVRKTNLQKMGQMDLIKCRPDGSFEQIQCDTEF 877
>AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical
protein B0238.12 protein.
Length = 166
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 345 VCSCRSGYVRS-CCSGCVR 292
VC CRSGYVR+ CVR
Sbjct: 70 VCQCRSGYVRNEITRQCVR 88
>U50311-8|AAA92312.1| 145|Caenorhabditis elegans Hypothetical
protein C25E10.7 protein.
Length = 145
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 342 CSCRSGYVRSCCSGCVR 292
C C+ GYVR+ + CVR
Sbjct: 51 CVCKDGYVRNTKNDCVR 67
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -1
Query: 342 CSCRSGYVRSCCSGCV-RNCWSGCVCS 265
CSC G + C CV C +G CS
Sbjct: 1785 CSCGDGLTGNRCQNCVGHECLNGGFCS 1811
>Z50794-6|CAA90659.2| 388|Caenorhabditis elegans Hypothetical
protein F59F5.5 protein.
Length = 388
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -1
Query: 342 CSCRSGYVRSCCSGCVRNC 286
C C S + C SGC NC
Sbjct: 111 CHCTSRHGEDCDSGCSTNC 129
>U58742-4|AAB36856.1| 242|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 3 protein.
Length = 242
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 348 CVCSCRSG-YVRSCCSGCVRNCWSGCVCSSSVRM 250
C C+S +V C S C +NC + CS+S +
Sbjct: 27 CQNQCKSAPFVNQCQSSCQQNCQTSS-CSASATL 59
>U53141-8|AAA96110.3| 572|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 13
protein.
Length = 572
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 342 CSCRSGYVRSCCSGCVRNCWSGCVCSS 262
C C S SC G ++N +S C C S
Sbjct: 119 CGCPSISSPSCDCGTLQNQYSSCGCGS 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,220,437
Number of Sequences: 27780
Number of extensions: 137626
Number of successful extensions: 702
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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