Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M21
(277 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 30 0.070
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 0.49
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 26 0.86
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 26 1.1
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 2.0
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 2.6
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 25 2.6
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom... 25 2.6
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 24 3.5
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 24 3.5
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 24 4.6
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 24 4.6
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 23 6.1
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr... 23 6.1
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 23 6.1
SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyc... 23 8.0
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 23 8.0
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 23 8.0
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 23 8.0
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 29.9 bits (64), Expect = 0.070
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 9 TNWYRS*IWVRKDVL-PSRSDFSMTLNPHKVLWGVRFSPTFIDFTKGLMEIGKP 167
T++++ W+ D + P + +++T+ V+WG+R++ T + TK ++ P
Sbjct: 449 TSYFKDDSWMDDDYISPCMTTYNLTMGWENVIWGLRYAET--ELTKFKFDLPVP 500
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 0.49
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 185 PVKKVYKDGVESELNGLISDILISLDDKY 271
P+ DG+ +E+N ++ I SLD+ Y
Sbjct: 353 PIPDKVPDGILNEVNAMVDAISFSLDENY 381
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 26.2 bits (55), Expect = 0.86
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 134 FYKGIDGNWKTDKVIDIPVKKVYK 205
FYKGID W I +P+ + K
Sbjct: 347 FYKGIDIQWARSSEIFVPINTLLK 370
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 1.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 80 PKSAQGFVGCAVQSNVYRFYKGIDGNWKTDKVI 178
PKS + V C+ N Y + K DG WK V+
Sbjct: 65 PKSNR-IVTCSQDRNAYVYEKRPDGTWKQTLVL 96
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1317
Score = 25.0 bits (52), Expect = 2.0
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +3
Query: 30 IWVRKDVLPS 59
IW+RKD+LPS
Sbjct: 1239 IWIRKDILPS 1248
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 24.6 bits (51), Expect = 2.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 125 VYRFYKGIDGNWKTDKVIDIPVKKVYKDGVESELNGLISDILISLD 262
V +K ID +T+KV P DG+ + N L +L LD
Sbjct: 418 VETLHKLIDSAMQTEKVKKDPSLSQVFDGISNSFNTLHKTVLEMLD 463
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 24.6 bits (51), Expect = 2.6
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = -1
Query: 79 VMEKSDLEGSTSFLTQIYDLYQFVP 5
+++++D + F QIYD+Y+++P
Sbjct: 168 ILDEADELLNQGFKEQIYDIYRYLP 192
>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 24.6 bits (51), Expect = 2.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 232 TVQLGLDAIFINFFYRYIDDFIGFPISINPFVKSINVGLN 113
TV +G + N FY + + S+NP K + +GL+
Sbjct: 109 TVYVGPQVLLANTFYWKMVVDVSPAFSVNPIDKKLAIGLS 148
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 24.2 bits (50), Expect = 3.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 150 MEIGKPIKSSIYR*KKFIKMASS 218
+ IG + S++R + FIK+ASS
Sbjct: 1007 LAIGHVLDDSVFRNRDFIKLASS 1029
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 24.2 bits (50), Expect = 3.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 8 HELVQVIDLGKEGCAPLEIRFLHDP 82
H V ++ GC PLE + L DP
Sbjct: 446 HVNVPALEFDVSGCIPLEPKELEDP 470
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 23.8 bits (49), Expect = 4.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 235 QTVQLGLDAIFINFFYRYIDDFIGFPISINPFVKSINVGLNRTPHKTLCGFR 80
+TV L +IF + +I +I F I+ N +GLN P+K R
Sbjct: 1386 KTVVASLPSIF-SLIATWIVLYITFAIAFNQIFGLTKLGLNGGPNKNFRSIR 1436
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 23.8 bits (49), Expect = 4.6
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 246 ISDIKPFSSDSTPSL*TFFTGISMTLSVF-QFPSIP 142
+SDI+P S S+P + T IS L+V F IP
Sbjct: 449 VSDIRPLPSVSSPIMRADSTPISHNLAVTPSFSPIP 484
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 23.4 bits (48), Expect = 6.1
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +2
Query: 65 RFLHDPKSAQGFVGCAVQSNVYRFYKGIDGNWKTDKVIDIPVKK 196
+FLH K+A+ ++ + ++ W TD++ DI K
Sbjct: 523 KFLHTLKTARYYLETVQLHQLKKYVTYFSQIWSTDELADISETK 566
>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 114
Score = 23.4 bits (48), Expect = 6.1
Identities = 6/19 (31%), Positives = 15/19 (78%)
Frame = +2
Query: 182 IPVKKVYKDGVESELNGLI 238
+P+ K ++G+++ +NGL+
Sbjct: 72 VPILKTTQEGIQTAMNGLL 90
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 23.4 bits (48), Expect = 6.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 104 GCAVQSNVYRFYKGIDGNWKTDKVIDIPVK 193
G +++ R Y G+ GN+ DK + PVK
Sbjct: 37 GITIRNQPIRSYSGLRGNFLIDKRLS-PVK 65
>SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 183
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 250 KDI*YQTVQLGLDAIFINFFYRYIDDFI 167
KD+ Y+ V LD + N R I+DF+
Sbjct: 35 KDMNYEKVNEELDKMGYNIGIRLIEDFL 62
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 23.0 bits (47), Expect = 8.0
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = -1
Query: 238 YQTVQLGLDAIFINFFYRYIDDFIG----FPISINPFVKSINVGLNRTPHKTL 92
+ T+ +G+ +F ++DDF G F I + + I PH+ L
Sbjct: 258 FGTLHVGIQFPLYEYFKSFLDDFFGKKSNFHIVLAATLSKIAASTVTYPHEVL 310
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 62 SRGEHILPYPNL*PVPIRAS 3
SR H +PY P+P+R S
Sbjct: 361 SRDPHSMPYYRREPIPLRPS 380
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 214 DAIFINFFYRYIDDFIGFPISINPFVK 134
D F F RY+D +GF N F K
Sbjct: 108 DKGFSGFSSRYVDKALGFATGWNYFFK 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,299,638
Number of Sequences: 5004
Number of extensions: 26628
Number of successful extensions: 80
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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