Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M21
(277 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428... 97 1e-21
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 29 0.40
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571... 27 1.6
05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405 27 2.1
03_02_0983 - 12933082-12934884,12935669-12936487,12936754-129367... 27 2.8
03_01_0322 + 2515949-2516330,2516418-2516579,2516900-2516940,251... 27 2.8
01_06_1205 + 35406456-35408072 27 2.8
05_03_0364 + 13007002-13007538,13007965-13008393,13008649-130089... 26 3.7
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526... 26 5.0
04_03_0620 - 18088287-18088495,18089174-18089210,18089315-180893... 25 6.5
06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255 25 8.7
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 25 8.7
>01_06_1797 +
39941482-39941608,39942302-39942497,39942601-39942828,
39943157-39943388,39943476-39943583,39943696-39943968,
39944261-39944545
Length = 482
Score = 97.5 bits (232), Expect = 1e-21
Identities = 46/92 (50%), Positives = 61/92 (66%)
Frame = +2
Query: 2 PRHELVQVIDLGKEGCAPLEIRFLHDPKSAQGFVGCAVQSNVYRFYKGIDGNWKTDKVID 181
P EL Q +DLG G PLE+RFLHDP G+VGCA+ SN+ RF+K DG+W + I
Sbjct: 242 PGGELKQTLDLGSTGLLPLEVRFLHDPSKDTGYVGCALTSNMVRFFKTADGSWSHEVAIS 301
Query: 182 IPVKKVYKDGVESELNGLISDILISLDDKY*Y 277
I KV ++ + E+ GLI+D +ISLDD+Y Y
Sbjct: 302 IKPLKV-RNWILPEMPGLITDFVISLDDRYLY 332
>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 29.5 bits (63), Expect = 0.40
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 63 SDFSMTLNPHKVLWGVRFSPTFIDFTKGLMEI 158
++F TL PH +LW + P F+ ++ G MEI
Sbjct: 1066 NNFISTLFPHFLLWRETYGPVFL-YSTGAMEI 1096
>08_01_0661 -
5708088-5708131,5708217-5710048,5710527-5710625,
5711015-5711508,5711579-5711632,5712597-5712683,
5712684-5712776
Length = 900
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 161 KTDKVIDIPVKKVYKDGVESELNGLISDILISL 259
K + D+P+ K +KD ES L+ +I I+ +L
Sbjct: 340 KCSSLADLPIVKSWKDDQESSLDEIIRSIVSNL 372
>05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405
Length = 488
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +3
Query: 36 VRKDVLPSRSDFSMTLNPHKVL---WGVRFSPTFIDFTKGLMEIGKPIKSSIYR 188
+R L S F T N K+L WG P F++ T L + PIK + R
Sbjct: 430 LRNFELKLESPFPKT-NWSKILLEPWGKVMGPNFVEMTLTLSNLKTPIKDEVMR 482
>03_02_0983 -
12933082-12934884,12935669-12936487,12936754-12936795,
12937116-12937244
Length = 930
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 75 WRNLISRGAHPSLPKSMTCTNSCL 4
W L++RG H P ++ T +CL
Sbjct: 429 WPRLLARGWHSEKPNDVSTTKNCL 452
>03_01_0322 +
2515949-2516330,2516418-2516579,2516900-2516940,
2517055-2517086,2519311-2519467
Length = 257
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 128 KRWTEPHTPQNLVRI*GHGE 69
K WT P TP +L+ GHG+
Sbjct: 64 KWWTTPLTPDDLIEPTGHGQ 83
>01_06_1205 + 35406456-35408072
Length = 538
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -3
Query: 173 LYRFSNFHQSLCKIYKRW 120
L RF+NF +++C++ RW
Sbjct: 462 LSRFNNFVEAICQVQSRW 479
>05_03_0364 +
13007002-13007538,13007965-13008393,13008649-13008990,
13009904-13010035,13010432-13010596
Length = 534
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 176 IDIPVKKVYKDGVESELNGLISDILISLDDKY 271
+D+PVKK K + ++N ++++I D +Y
Sbjct: 243 VDLPVKKPLKSKLAIKINAQGTEVVIRFDVRY 274
>01_07_0050 -
40751994-40752086,40752193-40752300,40752501-40752667,
40752756-40752882,40752984-40753145,40753674-40753837,
40753931-40754024,40754160-40754284,40754387-40754532,
40754676-40754764,40755524-40755589,40755990-40756148
Length = 499
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -1
Query: 238 YQTVQLGLDAIFINFFYRYIDDFIGFPISINP-----FVKSINVGLNRTPHKT 95
Y + +G + +I F+R + D G PI+ P V+ + N+T H T
Sbjct: 55 YAPICVGKEDFYIRRFFRRVQDCFGRPIASKPDAWFDVVERYSTDSNKTLHCT 107
>04_03_0620 -
18088287-18088495,18089174-18089210,18089315-18089395,
18089771-18089838,18093361-18094219
Length = 417
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 97 TLCGFRV-MEKSDLEGSTSFLT 35
TLC + V M+ SD + STS+LT
Sbjct: 192 TLCSYAVLMDSSDFKFSTSYLT 213
>06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255
Length = 863
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 154 SINPFVKSINVGLNRTPHKTLCGFRVMEKSDLEGSTS 44
SI P V+S+ ++ T L F+V DLEG S
Sbjct: 489 SIKPHVRSLACSMDCTGLHPLSEFKVARVLDLEGCES 525
>04_04_1228 + 31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = -1
Query: 142 FVKSINVGLNRTPHKTLCGFRVMEKSDLEGSTSFLTQIYDLYQ 14
++K + L + + + R++ K+DL G + Y+L Q
Sbjct: 1053 YIKDVGTRLKKLHYMSTYSLRIVGKTDLNGLDDKILAFYNLTQ 1095
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,969,381
Number of Sequences: 37544
Number of extensions: 158926
Number of successful extensions: 380
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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