Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M20
(351 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 134 3e-33
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 129 1e-31
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 0.64
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 27 0.64
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 3.4
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 3.4
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 6.0
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 24 6.0
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 24 7.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 24 7.9
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 134 bits (325), Expect = 3e-33
Identities = 66/99 (66%), Positives = 76/99 (76%)
Frame = +1
Query: 49 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 228
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59
Query: 229 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYE 345
+T+FGGG+STGFALIYD+ + KKFEP +RL R G E
Sbjct: 60 LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAE 98
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 129 bits (311), Expect = 1e-31
Identities = 60/96 (62%), Positives = 73/96 (76%)
Frame = +1
Query: 49 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 228
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59
Query: 229 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHG 336
+T++GGG++TGFALIYD ++ KKFEP +RL R G
Sbjct: 60 LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVG 95
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 0.64
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 166 EIREKLAKMYKVTPDVVFVFGFKTNFGG 249
+++E LAK YK+ P +F F T+ G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 27.5 bits (58), Expect = 0.64
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 237 RLETEHENY-VWRHFVHFSELFTDLSFADGRFSWMQDIAYHL 115
RLE EH V R+ L +F D R+ W Q+I+ L
Sbjct: 261 RLEVEHPGEEVLRNNRILGRLMPSRAFGDARYKWSQEISERL 302
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 264 SGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQDI 127
+G +A E HENY H E++ D + R ++ DI
Sbjct: 60 NGMYAGAENHNVENHENYTMVGHDHMEEVYGDDLVNEPRIAYSSDI 105
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 323 SLCFGSNFFAKSSVS*IKANPVDLP 249
S CF +N F+KSS+ I +N +P
Sbjct: 766 SFCFINNLFSKSSLKAISSNDSIVP 790
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 24.2 bits (50), Expect = 6.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 340 TGRDERVCVLAQTSLLSLACRRLKQ 266
+G DER V L+ CRRLKQ
Sbjct: 519 SGTDERCLVCLSNFELNDECRRLKQ 543
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 24.2 bits (50), Expect = 6.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 308 SNFFAKSSVS*IKANPVDLPPPKFVLKPNTKTTS 207
SN+ A S V + N +DLPPP + + K S
Sbjct: 135 SNWRADSGVVQVIDNIIDLPPPALEILSSEKDFS 168
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 248 PPKFVLKPNTKTTSGVTLYILASFS 174
PPK LKP+ T+ ++ Y LA S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 183 ELFTDLSFADGRFSWMQDIAYHLLARQQSVGHKFTRT 73
+L DLS + + S +Q +H+ A+ +S ++T T
Sbjct: 797 KLKADLSNLESKLSSLQQDNFHMKAQIESSNQEYTAT 833
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,822
Number of Sequences: 5004
Number of extensions: 26796
Number of successful extensions: 91
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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