Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M20
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 140 4e-34
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 136 5e-33
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 131 2e-31
01_06_0355 + 28657833-28660665,28660762-28661126 31 0.25
07_03_0665 + 20470160-20471542 26 7.2
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624... 26 7.2
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 26 9.6
10_02_0097 + 5283306-5283683,5284618-5284758,5284928-5285074,528... 26 9.6
08_02_0236 + 14652034-14652225,14652311-14652527,14652561-146532... 26 9.6
04_04_1214 - 31798271-31799134,31799218-31799301,31799469-317996... 26 9.6
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 26 9.6
02_04_0583 + 24078766-24079800,24080585-24081643 26 9.6
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 26 9.6
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 140 bits (338), Expect = 4e-34
Identities = 64/95 (67%), Positives = 80/95 (84%), Gaps = 1/95 (1%)
Frame = +1
Query: 67 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 243
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 244 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK 348
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATK 105
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 136 bits (329), Expect = 5e-33
Identities = 63/95 (66%), Positives = 79/95 (83%), Gaps = 1/95 (1%)
Frame = +1
Query: 67 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 243
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 244 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK 348
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATK 105
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 131 bits (316), Expect = 2e-31
Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Frame = +1
Query: 67 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 243
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 244 GGGKSTGFALIYDTLDLAKKFEPKHRLAR 330
GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 31.1 bits (67), Expect = 0.25
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 227 PNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICLRANNLLVINLRVRIVA 63
PN S +TL L + + L +GFP CK H + + + LL + L I+A
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLLKVVLIPSILA 724
>07_03_0665 + 20470160-20471542
Length = 460
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 178 FHGSQFC*RSVFLDARHRIPSACA 107
FHG FC S F HR S+ A
Sbjct: 104 FHGGSFCTESAFCRTYHRYASSLA 127
>01_01_0801 -
6241710-6241869,6242522-6242689,6243202-6243269,
6243372-6243593,6243676-6243774
Length = 238
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 195 VHFSELFTDLSFADGRFSWMQDIAYHLLARQQSVGHKFTRTNRR 64
V F + T+LSFADG W +A H + V F+ N R
Sbjct: 6 VLFGDSITELSFADG--GWGAALADHFARKADVVLRGFSGYNTR 47
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 25.8 bits (54), Expect = 9.6
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -2
Query: 227 PNTKTTSGVTLYILASFSRISVLLTVGFPGC-KTSHTICLRANNLLVINLRVRIVAVPSL 51
P+ S +TL L +R+ +GFP C + SH+ R +LL I L I A ++
Sbjct: 648 PSGGVFSNITLQSLMGNARLCGAQHLGFPACLEKSHS--TRRKHLLKIVLPAVIAAFGAI 705
Query: 50 IFDYFRDFGVK 18
+ + G K
Sbjct: 706 VVLLYLMIGKK 716
>10_02_0097 +
5283306-5283683,5284618-5284758,5284928-5285074,
5285226-5285378,5285509-5285644,5285740-5285840
Length = 351
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 175 EKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHG 336
E L ++YK+ D ++ T FGG + G A ++ ++ K+ PK ++ G
Sbjct: 122 ELLTQVYKLPTDRIYA----TYFGGDEKFGLAPDTESKNIWLKYLPKEKVLPFG 171
>08_02_0236 +
14652034-14652225,14652311-14652527,14652561-14653208,
14653374-14654364,14654532-14654703
Length = 739
Score = 25.8 bits (54), Expect = 9.6
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 25 PKSRK*SKMSEGTATIRTRKF--MTNRLLARKQMVCDVLHPGKPTVSKTEIREKL 183
P + SK SE +A + RK NR +V V G+P KT +REK+
Sbjct: 87 PANTTGSKKSERSAKAKKRKGERSVNRKDEGFHVVTHVSPKGEPLTPKTALREKI 141
>04_04_1214 -
31798271-31799134,31799218-31799301,31799469-31799614,
31799658-31799739
Length = 391
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 262 GFALIYDTLDLAKKFEPKHRL 324
GF L D L+ AK F+ KH+L
Sbjct: 129 GFVLGKDALERAKSFDEKHQL 149
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 127 DVLHPGKPTVSKTEIREKLAKMYKVTPDVVFV 222
D+L + KT +R L Y + PD +FV
Sbjct: 724 DILSIARSVCCKTSLRAALKAKYGILPDNIFV 755
>02_04_0583 + 24078766-24079800,24080585-24081643
Length = 697
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 269 ANPVDLPPPKFVLKPNTK 216
ANPV LPPP+ P K
Sbjct: 219 ANPVALPPPRLAALPQRK 236
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -2
Query: 176 SRISVLLTVGFPGCKTSHTICLRANNLLVINLRVRIVAVPSLI 48
+R+ V + +GF C+ T C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,251,910
Number of Sequences: 37544
Number of extensions: 170576
Number of successful extensions: 460
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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