Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M20
(351 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal pro... 143 3e-35
Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical pr... 42 9e-05
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 33 0.043
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 5.0
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 5.0
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chlor... 27 5.0
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chlor... 27 5.0
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo... 27 5.0
U97194-6|AAB52451.2| 244|Caenorhabditis elegans Hypothetical pr... 26 6.6
AL132876-6|CAC48121.2| 350|Caenorhabditis elegans Hypothetical ... 26 6.6
AF078788-2|AAC26964.1| 311|Caenorhabditis elegans Hypothetical ... 26 6.6
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 26 8.7
U97549-9|AAB52849.2| 472|Caenorhabditis elegans Hypothetical pr... 26 8.7
U80439-7|AAB37644.1| 344|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 26 8.7
>AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 24 protein.
Length = 131
Score = 143 bits (347), Expect = 3e-35
Identities = 64/94 (68%), Positives = 77/94 (81%)
Frame = +1
Query: 67 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 246
TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V FGF++ G
Sbjct: 6 TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65
Query: 247 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK 348
GGKS GFAL+YDT+D AKKFEPK+RL R GL K
Sbjct: 66 GGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATK 99
>Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical
protein T26G10.3 protein.
Length = 91
Score = 42.3 bits (95), Expect = 9e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 118 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 216
MV +V+ PG+PT K +IREK+A Y + PD +
Sbjct: 1 MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 33.5 bits (73), Expect = 0.043
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 262 GFALIYDTLDLAKKFEPKH 318
GF L+YDT D A K++P+H
Sbjct: 54 GFTLVYDTFDFANKYQPEH 72
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 26.6 bits (56), Expect = 5.0
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = -2
Query: 239 FVLKPNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICLRANNLLVINLRVRIVAV 60
F++ T +T TL + +F SV+L F K +C+ ++ +I++ ++ V
Sbjct: 50 FIIATFTASTIISTL-LTGAFLVASVILWKRFKHMKFFWFLCMLTLSIFIISILNLLINV 108
Query: 59 PSLIFDYFRDFGVKTHA 9
P+ +F VK+ A
Sbjct: 109 PATLFSLLTKDFVKSEA 125
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 290 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 165
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 290 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 165
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 290 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 165
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 290 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 165
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform a protein.
Length = 1050
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 13 CVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 147
C+ +P+ RK S S A +RT F + + K+M+ D+ PGK
Sbjct: 41 CIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83
>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform b protein.
Length = 1085
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 13 CVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 147
C+ +P+ RK S S A +RT F + + K+M+ D+ PGK
Sbjct: 41 CIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83
>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
chloride channel CLH-4b protein.
Length = 1084
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 13 CVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 147
C+ +P+ RK S S A +RT F + + K+M+ D+ PGK
Sbjct: 41 CIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83
>U97194-6|AAB52451.2| 244|Caenorhabditis elegans Hypothetical
protein C37A2.6 protein.
Length = 244
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 204 RHFVHFSELFTDLSFADGRFSWMQDI 127
R F+ ++F D FA+ FSW++ I
Sbjct: 156 RKFILLGDMFYDSDFAELLFSWLKKI 181
>AL132876-6|CAC48121.2| 350|Caenorhabditis elegans Hypothetical
protein Y105E8A.6 protein.
Length = 350
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 77 RVNL*PTDCWRASRWYAMSCIQENRPSAKLR 169
R+++ PTD W A+R A+S N+ KL+
Sbjct: 120 RISIDPTDDWLAARLKAVSSDDMNQQLVKLK 150
>AF078788-2|AAC26964.1| 311|Caenorhabditis elegans Hypothetical
protein ZC190.5 protein.
Length = 311
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 106 PTICWS*IYAYESSLFLHSFLI 41
P+I WS + +ES L HSF +
Sbjct: 15 PSIIWSTLTVFESILVFHSFTV 36
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 166 EIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYE 345
+IR+++ +MY V V F + +IYD + LAKK + +L + L E
Sbjct: 424 KIRKEIPEMYGFIQTPVTVKTFIVQMEEERRKKTKIIYDKVQLAKKKNKEIKLKKKVLEE 483
Query: 346 KK 351
++
Sbjct: 484 EE 485
>U97549-9|AAB52849.2| 472|Caenorhabditis elegans Hypothetical
protein F15A8.7 protein.
Length = 472
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 64 ATIRTRKFMTNRLLARKQMVCDVLHPG 144
A + T +F+ R+L+ + +V DVL PG
Sbjct: 336 AEVLTPRFLEPRVLSPEALVIDVLSPG 362
>U80439-7|AAB37644.1| 344|Caenorhabditis elegans Hypothetical
protein C01G8.6 protein.
Length = 344
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -2
Query: 314 FGSNFFAKSSVS*IKANPVDLPPPKFVLKPNTKTT 210
+ S A SV+ NP PPP V K N K T
Sbjct: 270 YASTVTASPSVASYSPNPSQPPPPVAVAKLNMKMT 304
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -1
Query: 129 IAYHLLARQQSVGHKFTRTNRRCSFTHF 46
+A H+ A + S+G+ + +C+ HF
Sbjct: 991 VAMHISAEEGSIGNTYPLPQMKCTIDHF 1018
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,964,228
Number of Sequences: 27780
Number of extensions: 151686
Number of successful extensions: 432
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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