Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M19
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 210 7e-56
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 210 7e-56
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 210 7e-56
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 52 3e-08
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 34 0.009
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 0.74
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 1.7
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 1.7
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 1.7
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 1.7
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 3.0
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 3.9
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 5.2
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 24 6.9
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 6.9
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 24 9.1
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 210 bits (512), Expect = 7e-56
Identities = 93/123 (75%), Positives = 107/123 (86%)
Frame = +1
Query: 10 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIV 189
TEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+
Sbjct: 285 TEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVII 344
Query: 190 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVP 369
LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VP
Sbjct: 345 LNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVP 404
Query: 370 SKP 378
SKP
Sbjct: 405 SKP 407
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 210 bits (512), Expect = 7e-56
Identities = 93/123 (75%), Positives = 107/123 (86%)
Frame = +1
Query: 10 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIV 189
TEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+
Sbjct: 285 TEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVII 344
Query: 190 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVP 369
LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VP
Sbjct: 345 LNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVP 404
Query: 370 SKP 378
SKP
Sbjct: 405 SKP 407
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 210 bits (512), Expect = 7e-56
Identities = 93/123 (75%), Positives = 107/123 (86%)
Frame = +1
Query: 10 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIV 189
TEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+
Sbjct: 285 TEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVII 344
Query: 190 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVP 369
LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VP
Sbjct: 345 LNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVP 404
Query: 370 SKP 378
SKP
Sbjct: 405 SKP 407
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 52.0 bits (119), Expect = 3e-08
Identities = 32/113 (28%), Positives = 53/113 (46%)
Frame = +1
Query: 40 EALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNG 219
E + ++ GD V V+ +++ GYV +KN P F AQ+ +L P ++ G
Sbjct: 519 EEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTG 576
Query: 220 YTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKP 378
Y+ V+ HTA FA++ K+D +T + ++ P G I L P
Sbjct: 577 YSCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMKIIAELETQTP 628
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 33.9 bits (74), Expect = 0.009
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 10 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 126
T V +EM + L AV GDN G ++++ ++L+RG +
Sbjct: 296 TTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMI 334
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 0.74
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 353 MAASPDLMDLGLSSVDLPVRRSTFS 279
++ +PDL D+ LSSVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 1.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 153 QGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 293
+GS ++S + +S + I CIG+ SPH +C R Q +P
Sbjct: 90 KGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 1.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 32 CTTRLYKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGEL 163
CT + KL+PV L T + A+ T+ I T PG++
Sbjct: 196 CTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDI 239
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 1.7
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 374 LEGTRLTMAASPDLMDLGLSSVDLPVRRSTFSLISANLQAMWAVWQSNTGVYPF 213
LE R ++ +L+D LSSV L + + S++S+ + + + G+ PF
Sbjct: 122 LEVKRTEGVSTTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 1.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 338 DLMDLGLSSVDL--PVRRSTFSLISANLQAMWAVWQSNTGVY 219
+L LG++ + P +RST S ++ L W + N GVY
Sbjct: 316 ELSKLGVTIIGSKDPKKRSTHSYVAKILNPEWDAFLKNEGVY 357
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 297 TTVDFLFDFGKFAGYVGCVAIQYRCVSV*YLTWV 196
T +D+LF F+ +G + Y ++V Y+ WV
Sbjct: 73 TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 3.9
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +2
Query: 62 PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 241
P + +++ S + S + +VT ++ TTH +++T + T + D+H +
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTFLTT 438
Query: 242 TQPT*PAN 265
P+ P+N
Sbjct: 439 ITPS-PSN 445
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 5.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 278 LISANLQAMWAVWQSNTGV 222
L+SA+ W +W +TGV
Sbjct: 280 LVSASFDTTWRLWDVHTGV 298
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 6.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 190 LNHPGQISNGYTPVLDCHTAHIACK 264
L HP Q+SN +T C A AC+
Sbjct: 305 LPHPIQLSNYFTLPSSCAQADAACQ 329
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 126 NVTTAQFLDRYVFDVETNIVTGYS 55
++T F+D YV +++ IV G+S
Sbjct: 373 SLTDTSFMDDYVNELQLEIVPGFS 396
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 23.8 bits (49), Expect = 9.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 266 NLQAMWAVWQSNTGVYPFDI 207
N + MWAVW + + FD+
Sbjct: 295 NFKIMWAVWGTMRTINSFDL 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.130 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,616
Number of Sequences: 5004
Number of extensions: 36202
Number of successful extensions: 77
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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