Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M18
         (385 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q550J2 Cluster: Putative uncharacterized protein; n=4; ...    33   2.5  
UniRef50_Q7S739 Cluster: Predicted protein; n=1; Neurospora cras...    32   4.3  
UniRef50_Q74HW0 Cluster: Putative uncharacterized protein; n=1; ...    31   7.5  
UniRef50_A1AR10 Cluster: Sigma54 specific transcriptional regula...    31   7.5  
UniRef50_UPI000150A287 Cluster: hypothetical protein TTHERM_0026...    31   9.9  
UniRef50_A0RYJ1 Cluster: Streptogramin lyase; n=2; Thermoprotei|...    31   9.9  

>UniRef50_Q550J2 Cluster: Putative uncharacterized protein; n=4;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 634

 Score = 32.7 bits (71), Expect = 2.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 205 RPEGSVTDVIGECSCGRTKLSGKGAMMASIFINCV 101
           +P G+   V GEC C  ++ +GKG  ++ I+IN V
Sbjct: 183 QPHGTCNRVTGECECD-SQTNGKGCELSRIYINSV 216


>UniRef50_Q7S739 Cluster: Predicted protein; n=1; Neurospora
           crassa|Rep: Predicted protein - Neurospora crassa
          Length = 88

 Score = 31.9 bits (69), Expect = 4.3
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 92  VCFHAINKNACHHGALT-GQFCPATTTLTNYIGNRSLWSETRTCE 223
           +C +  +   C+H +LT  +FCP+ + +    G R +W   R  E
Sbjct: 1   MCQYYAHVFTCNHVSLTFARFCPSASMIQTRCGERQIWQTIRMAE 45


>UniRef50_Q74HW0 Cluster: Putative uncharacterized protein; n=1;
           Lactobacillus johnsonii|Rep: Putative uncharacterized
           protein - Lactobacillus johnsonii
          Length = 1563

 Score = 31.1 bits (67), Expect = 7.5
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 159 PQLHSPITSVTDPSGLKLAPVSLHHINNECESLGVVVGFGQRPT 290
           P++ SP+ S   P+  K+AP+S+ H +N+ +   +     Q+ T
Sbjct: 781 PEVVSPVISGYTPTQSKIAPISVDHTSNDIDKTVIYTANKQQAT 824


>UniRef50_A1AR10 Cluster: Sigma54 specific transcriptional
           regulator, Fis family; n=3; Proteobacteria|Rep: Sigma54
           specific transcriptional regulator, Fis family -
           Pelobacter propionicus (strain DSM 2379)
          Length = 463

 Score = 31.1 bits (67), Expect = 7.5
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = +3

Query: 114 KMLAIMAPLPDSFV----LPQLHSPITSVTDP-SGLKLAPVSLHHINNECESLGVVVGFG 278
           +M+   AP+ D +     + ++ SP+    +  +G +LA  ++H  ++ C++  V V  G
Sbjct: 159 QMIGTSAPMRDLYARIIKIQKVESPVLIHGESGTGKELAARAIHQNSSRCQAPFVAVNCG 218

Query: 279 QRPTHW*TMFRAARFGH 329
             PTH   + ++  FGH
Sbjct: 219 ALPTH---LIQSELFGH 232


>UniRef50_UPI000150A287 Cluster: hypothetical protein TTHERM_00267920;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00267920 - Tetrahymena thermophila SB210
          Length = 2074

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 170  LTNYIGNRSLWSETRTCEFTSHQQ*VRVTGSCRWLRPAAYSLVNNV*SC 316
            +  Y  N+S +S   TC++ +++     TG+C+ + P +Y   NN+ SC
Sbjct: 929  MDGYTYNQSNYSCQSTCQYNTYRD--DTTGTCQSVCPTSYYNNNNLYSC 975


>UniRef50_A0RYJ1 Cluster: Streptogramin lyase; n=2;
           Thermoprotei|Rep: Streptogramin lyase - Cenarchaeum
           symbiosum
          Length = 927

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 105 QLIKMLAIMAPLPDSFVLPQLHSPITSVTDPSGLKLAPVSLHHI 236
           ++IK+LA++A +  + VLP    P T  T P     APV    +
Sbjct: 3   RMIKILAVLALISAAMVLPASAHPFTDETIPPQFSSAPVGTSEV 46


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,112,450
Number of Sequences: 1657284
Number of extensions: 7502716
Number of successful extensions: 16617
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16613
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15293670012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)