Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M18
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy...    26   1.8  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   5.4  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   5.4  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   7.1  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    24   7.1  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   9.4  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    24   9.4  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    24   9.4  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    24   9.4  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    24   9.4  

>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 193 SVTDVIGECSCGRTKLS 143
           S+T+V GE  CG+T++S
Sbjct: 114 SITEVFGEFRCGKTQMS 130


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 21   YFVFLVLSLRFKMGF**PNVCTPAC-AFTQLIKMLAIMAPLPDSFVLPQ 164
            Y ++L++ L  +M     +V   A  +F  L+K++ + A LPD   LPQ
Sbjct: 1275 YILYLIIPLLGRMSDADQDVRVLATTSFATLVKLVPLEAGLPDPPDLPQ 1323


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 198 SGLKLAPVSLHHINNECESLGVVVGF 275
           S + L+ +S HH+NNE        GF
Sbjct: 592 SSIDLSTLSNHHVNNEINRRSFAGGF 617


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 319 RAALNIVHQ*VGRWPK 272
           R A+NIV++ V  WPK
Sbjct: 280 REAINIVYKDVNEWPK 295


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 216 PVSLHHINNECESLGVVVGFGQRPTHW*TMFRAARF 323
           PV +H   +E  S     G  +RPTH+ T +  A+F
Sbjct: 857 PVDIH---SEFASYETQFGITKRPTHYNTSWDVAKF 889


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 298 EQCLELLDLDIFNTEDDLLKTFPSAAPK 381
           E+  +LLD D+FN     LK F    P+
Sbjct: 385 EEISKLLDKDLFNQSHYCLKCFQVKPPR 412


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 130 WRPYRTVLSCHNYTHQLHR 186
           +R   T+  CH+Y H++ R
Sbjct: 174 YRAIETLFGCHSYGHEVDR 192


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +2

Query: 95  CFHAINKNACHHGALTGQFCPATTTLTNYIGNRSLWSE 208
           CF     N      L+G+F      L   +  R LW+E
Sbjct: 615 CFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLWNE 652


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 7/19 (36%), Positives = 16/19 (84%)
 Frame = +1

Query: 310 ELLDLDIFNTEDDLLKTFP 366
           +L+D++  N +DD++++FP
Sbjct: 191 DLMDIESENKKDDIVESFP 209


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 272 LRPAAYSLVNNV*SCSIWTSLTPKMICLKRSRALHRR 382
           LRP  Y L+ +     I + L  + + L++S  LH++
Sbjct: 268 LRPTTYQLLRSPILSDIRSKLESERVVLEQSDLLHKK 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,972
Number of Sequences: 5004
Number of extensions: 30970
Number of successful extensions: 76
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)