Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M18
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1465 - 26729872-26730909                                         29   1.3  
08_01_0491 + 4290881-4291228,4291298-4291393                           28   2.2  
02_04_0256 + 21331396-21332268                                         27   6.7  
05_01_0163 - 1125364-1125422,1126062-1126205,1126640-1126756,112...    26   8.9  

>07_03_1465 - 26729872-26730909
          Length = 345

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 349 DHLRC*RCPNRAALNIVHQ*VGRWPKPTTTPSDS 248
           D  RC    + A  NIVH    RW   TT+PS S
Sbjct: 170 DLSRCFLAGDSAGGNIVHHVAQRWAASTTSPSSS 203


>08_01_0491 + 4290881-4291228,4291298-4291393
          Length = 147

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 159 PQLHSPITSVTDPSGLKLAPVSLHHINNECE--SLGVVVGF 275
           P+ H    +VTD +    A  + HH+ +E +  S  VV GF
Sbjct: 78  PRPHGATAAVTDTTSAAAAAAAAHHLQHEADGGSKHVVTGF 118


>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 202 PEGSVTDVIGECSCGRTKLSGKGAMMASI 116
           P  SVT++ GE + G+T+L  + A++A +
Sbjct: 59  PPASVTEIAGESASGKTQLCLQLALLAPL 87


>05_01_0163 -
           1125364-1125422,1126062-1126205,1126640-1126756,
           1126835-1126926,1127942-1128022,1128323-1128378,
           1128496-1128559,1128645-1128748,1129578-1129724,
           1129876-1129989,1130070-1130153
          Length = 353

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 202 PEGSVTDVIGECSCGRTKLSGKGAMMASI 116
           P G +T+V+G    G+T+   K A++A++
Sbjct: 98  PAGKLTEVVGPSGIGKTQFCLKLALLATL 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,657,328
Number of Sequences: 37544
Number of extensions: 214341
Number of successful extensions: 527
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)