Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M18
(385 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014298-2150|AAF48455.1| 2030|Drosophila melanogaster CG9198-PA... 30 0.90
L41342-1|AAA64873.1| 336|Drosophila melanogaster protein ( Dros... 28 3.6
D37788-1|BAA07039.1| 336|Drosophila melanogaster RecA protein h... 28 3.6
D17726-1|BAA04580.1| 336|Drosophila melanogaster Rad51 protein. 28 3.6
BT001791-1|AAN71546.1| 284|Drosophila melanogaster RH24133p pro... 28 3.6
AE014297-4533|AAN14213.1| 279|Drosophila melanogaster CG7948-PB... 28 3.6
AE014297-4532|AAF57005.1| 336|Drosophila melanogaster CG7948-PA... 28 3.6
BT022169-1|AAY51563.1| 418|Drosophila melanogaster IP01295p pro... 27 6.3
BT010106-1|AAQ22575.1| 214|Drosophila melanogaster GH06338p pro... 27 6.3
AE013599-161|AAF57272.2| 418|Drosophila melanogaster CG30431-PA... 27 6.3
>AE014298-2150|AAF48455.1| 2030|Drosophila melanogaster CG9198-PA,
isoform A protein.
Length = 2030
Score = 30.3 bits (65), Expect = 0.90
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 96 AFTQLIKMLAIMAPLPDSFVLPQLHSPITSVTDPSGLKLAPV 221
AF + + ML+ + P P S+ Q H+ S+ DP+G +L V
Sbjct: 608 AFEEELHMLSPIQPQPVSYTQRQAHNVCKSLRDPAGNRLTLV 649
>L41342-1|AAA64873.1| 336|Drosophila melanogaster protein (
Drosophila melanogaster(clone pDmR2210) RAD51 homolog
gene, complete cds. ).
Length = 336
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 226 KLTGASFRPEGSVTDVIGECSCGRTKL 146
KL G GS+T++ GE CG+T+L
Sbjct: 108 KLLGGGIET-GSITEIFGEFRCGKTQL 133
>D37788-1|BAA07039.1| 336|Drosophila melanogaster RecA protein
homologue protein.
Length = 336
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 226 KLTGASFRPEGSVTDVIGECSCGRTKL 146
KL G GS+T++ GE CG+T+L
Sbjct: 108 KLLGGGIET-GSITEIFGEFRCGKTQL 133
>D17726-1|BAA04580.1| 336|Drosophila melanogaster Rad51 protein.
Length = 336
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 226 KLTGASFRPEGSVTDVIGECSCGRTKL 146
KL G GS+T++ GE CG+T+L
Sbjct: 108 KLLGGGIET-GSITEIFGEFRCGKTQL 133
>BT001791-1|AAN71546.1| 284|Drosophila melanogaster RH24133p
protein.
Length = 284
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 226 KLTGASFRPEGSVTDVIGECSCGRTKL 146
KL G GS+T++ GE CG+T+L
Sbjct: 51 KLLGGGIET-GSITEIFGEFRCGKTQL 76
>AE014297-4533|AAN14213.1| 279|Drosophila melanogaster CG7948-PB,
isoform B protein.
Length = 279
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 226 KLTGASFRPEGSVTDVIGECSCGRTKL 146
KL G GS+T++ GE CG+T+L
Sbjct: 51 KLLGGGIET-GSITEIFGEFRCGKTQL 76
>AE014297-4532|AAF57005.1| 336|Drosophila melanogaster CG7948-PA,
isoform A protein.
Length = 336
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 226 KLTGASFRPEGSVTDVIGECSCGRTKL 146
KL G GS+T++ GE CG+T+L
Sbjct: 108 KLLGGGIET-GSITEIFGEFRCGKTQL 133
>BT022169-1|AAY51563.1| 418|Drosophila melanogaster IP01295p
protein.
Length = 418
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Frame = +1
Query: 31 FSCYHCDLRWVSSNQTFAH---------PRVLSRN**KCLPSWRPYRTVLSCHNYTH 174
F C HCD R++ Q +H PR+ +C SW P ++ L H +H
Sbjct: 291 FGCQHCDRRFILRTQLLSHLRTHTGEAKPRIFECQ--RCSKSW-PTKSDLRTHMRSH 344
>BT010106-1|AAQ22575.1| 214|Drosophila melanogaster GH06338p
protein.
Length = 214
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Frame = +1
Query: 31 FSCYHCDLRWVSSNQTFAH---------PRVLSRN**KCLPSWRPYRTVLSCHNYTH 174
F C HCD R++ Q +H PR+ +C SW P ++ L H +H
Sbjct: 87 FGCQHCDRRFILRTQLLSHLRTHTGEAKPRIFECQ--RCSKSW-PTKSDLRTHMRSH 140
>AE013599-161|AAF57272.2| 418|Drosophila melanogaster CG30431-PA
protein.
Length = 418
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Frame = +1
Query: 31 FSCYHCDLRWVSSNQTFAH---------PRVLSRN**KCLPSWRPYRTVLSCHNYTH 174
F C HCD R++ Q +H PR+ +C SW P ++ L H +H
Sbjct: 291 FGCQHCDRRFILRTQLLSHLRTHTGEAKPRIFECQ--RCSKSW-PTKSDLRTHMRSH 344
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,867,796
Number of Sequences: 53049
Number of extensions: 370168
Number of successful extensions: 739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1045179750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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