Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M18
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    27   6.0  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    26   7.9  
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    26   7.9  

>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 77  RLHTRVCFHAINKNACHHGALTGQFCP 157
           RL  R C +A N NAC   A     CP
Sbjct: 515 RLRNRKCMNAENNNACDGPAQDQMSCP 541


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 77  RLHTRVCFHAINKNACHHGALTGQFCP 157
           RL  R C +A N NAC   A     CP
Sbjct: 515 RLRNRKCMNAENNNACDGPAQDQMSCP 541


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +2

Query: 95   CFHAINKNACHHGA-LTGQFCP---ATTTLTNYIGNRSLWSETRTCEFTSHQQ*VRVTGS 262
            C+  +  N   +GA LT Q C    A+ T++  I N++  +   TC+ T+  Q + ++ S
Sbjct: 1781 CYQGLLVNNQTYGAPLTLQGCYGDCASITISTTIQNQNHTATLLTCDPTTVCQQLNMSNS 1840

Query: 263  CRWLRP 280
            C+ + P
Sbjct: 1841 CQTVEP 1846


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +2

Query: 95   CFHAINKNACHHGA-LTGQFCP---ATTTLTNYIGNRSLWSETRTCEFTSHQQ*VRVTGS 262
            C+  +  N   +GA LT Q C    A+ T++  I N++  +   TC+ T+  Q + ++ S
Sbjct: 1781 CYQGLLVNNQTYGAPLTLQGCYGDCASITISTTIQNQNHTATLLTCDPTTVCQQLNMSNS 1840

Query: 263  CRWLRP 280
            C+ + P
Sbjct: 1841 CQTVEP 1846


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 171 SPITSVTDPSGLKLAPVSLHHINNECESLGVVVG 272
           SP TS +  SG+   P   +  N EC+S  +++G
Sbjct: 69  SPSTSASGASGIPQPPPLPYWFNRECKSSLMMIG 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,130,997
Number of Sequences: 27780
Number of extensions: 185917
Number of successful extensions: 377
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)