Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M17
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   127   8e-31
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   127   8e-31
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   0.71 
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    27   1.2  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   1.6  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    26   2.9  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    25   3.8  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   3.8  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    25   5.0  
SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces...    25   5.0  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    25   6.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   8.7  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    24   8.7  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    24   8.7  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    24   8.7  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     24   8.7  

>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  127 bits (306), Expect = 8e-31
 Identities = 59/93 (63%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
 Frame = +3

Query: 153 KIGINGFGRIGRLVLR-ASIDKGADVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVD 329
           K+GINGFGRIGR+VLR A + K   VVAINDPFI L+YM Y+F+YDSTHGRF G+VE  D
Sbjct: 5   KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64

Query: 330 GHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVE 428
           G LV++G  I V +ERDP  I W  +GA+YV+E
Sbjct: 65  GKLVIDGNAIDVHNERDPADIKWSTSGADYVIE 97


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  127 bits (306), Expect = 8e-31
 Identities = 59/93 (63%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
 Frame = +3

Query: 153 KIGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVD 329
           K+GINGFGRIGR+VLR +I  G   VVA+NDPFI LDYM Y+F+YDSTHGRF+G+VE   
Sbjct: 5   KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64

Query: 330 GHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVE 428
           G LV++G  I V +ERDP  I W  +GAEYV+E
Sbjct: 65  GKLVIDGHSIDVHNERDPANIKWSASGAEYVIE 97


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 200 TEHQATDATKTVNSDFRTLDYGKSIFSQRSHSTFTLPSAEFTAAXG 63
           T  + T AT   + +F   +  KSI     H TFT PS E + + G
Sbjct: 7   TPGKPTTATSNSSLNFFVRNREKSIRCSSLHQTFTAPSPEASPSIG 52


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 160 ELTVLVASVAWCSVLRLIRV 219
           +L+V VA +AWC   RL+R+
Sbjct: 122 KLSVAVAELAWCPKSRLVRI 141


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 353 LSVYDEVSIYGLNGTLETTVSRIILEKV 270
           L +   V++ G NG  +TT+ ++ILEKV
Sbjct: 617 LDLKSRVALVGPNGAGKTTLIKLILEKV 644


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -3

Query: 323 GLNGTLETTVSRIILEKVHHVVKTNERIIDSNHIGTLINRSTEHQATDATKTVNSDFRTL 144
           G+ G+    V+ +    V+ + +T   +   N    L++   EH+  + + +V +D   +
Sbjct: 365 GMTGSTSEYVTPV--SSVNSMRETASPLNADNQYSPLLSWKLEHEVNNLSWSVKNDGLAV 422

Query: 143 DYGKSI 126
            YGKS+
Sbjct: 423 VYGKSL 428


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 384 GDPSQRTQL--SSFRLRRGVHLRPQRY 310
           G P++R  L   +F +RRGVHL+  +Y
Sbjct: 163 GIPTKRKDLFPCNFFIRRGVHLKVNKY 189


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 413 STSLTPWNSMGIPLREHSYLLSVYDEVSIYGLNGTLETTVSRIILEKVHH 264
           S S    +S  +PLREH  L +VY +V +  +   +     R +L    H
Sbjct: 50  SLSSVDVSSPSLPLREHLPLKNVYSQVPLLPVWSPIPKGPRRFLLPPKFH 99


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +3

Query: 168 GFGRIGRLVLRASIDKGADVVAINDPF----IGLDYMVYLFQYDSTHGRFKGTVEAVD 329
           G GR+  L++  SI K  D +    PF      + Y++   Q D    RF  T E V+
Sbjct: 641 GLGRVSTLLVTDSISKCIDEITKASPFADHPAAMQYIMNAAQ-DILRRRFHATSEQVE 697


>SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 72

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 320 LNGTLETTVSRIILEKVHHVVKTNERIIDSNHIGTLINRS 201
           +N  +E   S ++   + +V K NE I   NH   LIN S
Sbjct: 1   MNNPMEEQQSALLGRIISNVEKLNESITRLNHSLQLINMS 40


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
 Frame = +3

Query: 123 KYTLTIIKCSKIG---INGFGRIGRLVLRASIDKGADVVAINDPFIGLD------YMVYL 275
           +Y +TI      G   +N F  +G+L++  + D+  D+   ND    ++      YM Y+
Sbjct: 508 RYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQE-NDENAFMNCMAEACYMPYI 566

Query: 276 FQYDSTHGRFKG 311
           FQ  +    FKG
Sbjct: 567 FQCRAKQDNFKG 578


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 389 SMGIPLREHSYLLSVYDEVSIY 324
           S G+PL   + LLS+Y+   IY
Sbjct: 648 SKGVPLLVRNVLLSIYENKIIY 669


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 250 LVLTTWCTFSSMIRLTVVSRVPL 318
           LV+TTW  FS    L + S +PL
Sbjct: 148 LVMTTWFNFSVRSTLIISSFLPL 170


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 379 SLSENTAIFFPFTTRCPSTASTV 311
           ++S ++ I  PFT+  PST ST+
Sbjct: 140 NVSNSSQILSPFTSLLPSTLSTL 162


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 222 DVVAINDPFIGLDYMVYLFQY 284
           D++ +  P++  DY V LF+Y
Sbjct: 677 DLLIVISPYLNQDYAVTLFEY 697


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -3

Query: 389 SMGIPLREHSYLLSVYDEVSIYGLNGTLETTVSRIILEKVHHVVKTNERI 240
           S  + + ++   +  Y+ + +   +     T+S  ILE +H VVK  E I
Sbjct: 301 SKRVAIEDYKEYIRFYNNLWLVANDMIFGITMSSFILENLHLVVKLIENI 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,729
Number of Sequences: 5004
Number of extensions: 35273
Number of successful extensions: 133
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)