Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M17
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 129 8e-31
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 126 1e-29
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 95 2e-20
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 87 6e-18
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 76 1e-14
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 71 3e-13
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 56 2e-08
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34... 34 0.042
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 29 1.6
01_04_0096 - 15982944-15984066,15984296-15984949,15985037-15985305 29 1.6
06_03_0975 - 26471438-26472109,26472189-26472284,26472372-264724... 29 2.1
12_01_0935 - 9277421-9277584,9277908-9278111,9280742-9280982,928... 28 3.7
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 28 3.7
04_04_1057 - 30451759-30452523,30452627-30452701,30453180-304532... 28 3.7
03_04_0204 - 18444903-18445054,18445445-18445676,18445765-184458... 28 3.7
12_01_0937 - 9289999-9290046,9290123-9290458 27 4.9
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 27 4.9
12_01_0947 - 9396320-9396483,9396822-9397025,9397769-9398009,939... 27 8.5
11_06_0059 + 19691588-19691697,19692281-19692348,19692400-196925... 27 8.5
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582... 27 8.5
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 129 bits (312), Expect = 8e-31
Identities = 61/95 (64%), Positives = 75/95 (78%), Gaps = 2/95 (2%)
Frame = +3
Query: 150 SKIGINGFGRIGRLVLRASIDKG-ADVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAV 326
+K+GINGFGRIGRLVLR + ++ +VVA+NDPFI YM Y+F+YDSTHG FKGT++ V
Sbjct: 80 TKVGINGFGRIGRLVLRIATNRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGPFKGTIKVV 139
Query: 327 D-GHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVE 428
D L +NGKKI+V S+RDP IPWG GAEYVVE
Sbjct: 140 DESTLEINGKKISVTSKRDPSDIPWGNFGAEYVVE 174
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 126 bits (303), Expect = 1e-29
Identities = 58/95 (61%), Positives = 73/95 (76%), Gaps = 2/95 (2%)
Frame = +3
Query: 150 SKIGINGFGRIGRLVLRASIDKG-ADVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAV 326
+K+GINGFGRIGRLVLR + + +VVA+NDPFI YM Y+F+YDSTHG FKG+++ V
Sbjct: 139 TKVGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGPFKGSIKVV 198
Query: 327 -DGHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVE 428
D L +NGKK+ + S+RDP IPWG GAEYVVE
Sbjct: 199 DDSTLEINGKKVTITSKRDPADIPWGNFGAEYVVE 233
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 95.5 bits (227), Expect = 2e-20
Identities = 46/90 (51%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
Frame = +3
Query: 168 GFGRIGRLVLRASID-KGADVVAINDPFIGLDYMVYLFQYDSTHGRFK-GTVEAVDGHLV 341
GFGRIGRLV R ++ + ++VA+NDPFI +YM Y+F+YD+ HG++K V+ D +
Sbjct: 15 GFGRIGRLVARVALQSEDVELVAVNDPFITTEYMTYMFKYDTVHGQWKHHEVKVKDSKTL 74
Query: 342 VNG-KKIAVFSERDPHAIPWGQAGAEYVVE 428
+ G K++AVF R+P IPW AGAEYVVE
Sbjct: 75 IFGTKEVAVFGCRNPEEIPWAAAGAEYVVE 104
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 87.0 bits (206), Expect = 6e-18
Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 26/118 (22%)
Frame = +3
Query: 153 KIGINGFGRIGRLVLRASID-KGADVVAINDPFIGLDYMVYLFQYDSTHGRFK-GTVEAV 326
KIGINGFGRIGRLV R ++ + ++VA+NDPFI DYM Y+F+YD+ HG++K ++
Sbjct: 5 KIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIK 64
Query: 327 DGHLVVNGKK-IAVFS-----------------------ERDPHAIPWGQAGAEYVVE 428
D ++ G+K + VF ER+P IPW +AGAEYVVE
Sbjct: 65 DSKTLLLGEKPVTVFGISLDESNLFMVASVELMFDPVQFERNPDEIPWAEAGAEYVVE 122
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 76.2 bits (179), Expect = 1e-14
Identities = 44/97 (45%), Positives = 59/97 (60%), Gaps = 5/97 (5%)
Frame = +3
Query: 153 KIGINGFGRIGRLVLRASIDKG----ADVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVE 320
K+ INGFGRIGR LR +G DV+AIND G+ +L +YDST G F V+
Sbjct: 68 KVAINGFGRIGRNFLRCWHGRGDSSPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVK 126
Query: 321 AV-DGHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVE 428
V D + V+GK I V S+R+P +PWG+ G + V+E
Sbjct: 127 PVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIE 163
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 71.3 bits (167), Expect = 3e-13
Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Frame = +3
Query: 153 KIGINGFGRIGRLVLRASIDKG---ADVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEA 323
K+ INGFGRIGR LR ++ +VV +ND G+ +L +YDS G FK V+
Sbjct: 79 KVAINGFGRIGRNFLRCWHERENSPLEVVVVNDSG-GVRNASHLLKYDSMLGTFKADVKI 137
Query: 324 VDGHLV-VNGKKIAVFSERDPHAIPWGQAGAEYVVE 428
VD + V+GK I V S RDP +PW + G + V+E
Sbjct: 138 VDDQTISVDGKLIKVVSNRDPLKLPWAELGIDIVIE 173
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Frame = +3
Query: 153 KIGINGFGRIGRLVLRASIDK-GADVVAINDPFIGLDYMVYLF 278
KIGINGFGRIGRLV R ++ ++VA+NDPFI DYM+ F
Sbjct: 5 KIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTDYMICEF 47
Score = 55.2 bits (127), Expect = 2e-08
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Frame = +3
Query: 264 MVYLFQYDSTHGRFKG-TVEAVDGHLVVNGKK-IAVFSERDPHAIPWGQAGAEYVVE 428
+ Y+F+YD+ HG++K V+ D ++ G+K + VF R+P IPWG+ GAE+VVE
Sbjct: 91 VTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVTVFGCRNPEEIPWGETGAEFVVE 147
>03_01_0038 -
340564-341108,341214-341463,341546-341649,341728-343255,
343995-344056,344578-344728
Length = 879
Score = 34.3 bits (75), Expect = 0.042
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Frame = +2
Query: 11 KLYSTAXXVXWPSRIVDPPGLQ*IRQRGE*----TLSDFVAKIYSYHN 142
K +ST+ + PS ++DP G + ++Q E +L+DFV ++Y YH+
Sbjct: 132 KSHSTSTAMASPSGLLDPSGSKSMKQAEEDDLELSLADFVGELYGYHD 179
>04_04_1704 - 35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 29.1 bits (62), Expect = 1.6
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = -3
Query: 284 ILEKVHHVVKTNERIIDSNHIGTLINRSTEHQATDATKTVNSDFRTLDYG---KSIFSQR 114
IL +H+V+ N ++ N G ++ + E D + LD G K+ +QR
Sbjct: 1093 ILLTSYHIVRNNYMLLRGNGNGNNVDNNEEEPLWD--------YVILDEGHIVKNTKTQR 1144
Query: 113 SHSTFTLPSAEFTAAXGDPL 54
+ S F +PSA G P+
Sbjct: 1145 AQSLFQIPSAHRIVLTGTPI 1164
>01_04_0096 - 15982944-15984066,15984296-15984949,15985037-15985305
Length = 681
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = -3
Query: 266 HVVKTNERIIDSNHIGTLINRSTEHQATDATKTVNSDFRTLDYGKSIFSQRSHSTFTLPS 87
H+V+ E + +G + STE T T+ + F LD ++ +Q+ H TF+
Sbjct: 305 HLVRYIEILDIDKILGNHMEESTELLLKVWTSTMRTVFSVLDEMRTQLNQKDHGTFSSLK 364
Query: 86 AEFTAA 69
++ +A
Sbjct: 365 VDYFSA 370
>06_03_0975 -
26471438-26472109,26472189-26472284,26472372-26472482,
26472494-26472530,26472566-26472576,26472674-26473050,
26474310-26474895
Length = 629
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 123 KYTLTIIKCSKIGINGFGRIGRLVLRASIDKGADVVAINDPFIGLD 260
KY + + I GFG++G V R + G D+++ +DP+ +D
Sbjct: 202 KYVGVSLVGKTLAIMGFGKVGSEVARRAKGLGMDIIS-HDPYAPVD 246
>12_01_0935 -
9277421-9277584,9277908-9278111,9280742-9280982,
9282165-9282494
Length = 312
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 162 INGFGRIGRLVLRASIDKGADVVAINDPFIGLD 260
+ G G IGR ++ AS+ +G + P IGLD
Sbjct: 9 VGGTGYIGRRIVAASLAEGHPTFVLLRPEIGLD 41
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 123 KYTLTIIKCSKIGINGFGRIGRLVLRASIDKGADVVAINDPFIGLD 260
KY + I I GFG++G V R + G V+A +DP+ D
Sbjct: 202 KYVGVSLVGKTIAILGFGKVGSEVARRAKGLGMHVIA-HDPYASAD 246
>04_04_1057 -
30451759-30452523,30452627-30452701,30453180-30453254,
30453503-30453591,30454058-30454157,30454244-30454388,
30454609-30454658,30455033-30455114,30455200-30455282,
30455360-30455429,30455523-30455632,30455719-30455872,
30456639-30456796,30457338-30457517
Length = 711
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 387 HGDPSQRTQLSSFRLRRGVHLRPQRYP*NDRESNH 283
HG P +T SS+ RRG+ + P YP + H
Sbjct: 590 HGSPLGKTP-SSYSKRRGLPMPPHEYPSQHGQGRH 623
>03_04_0204 -
18444903-18445054,18445445-18445676,18445765-18445836,
18446201-18446347,18446559-18446614,18446727-18446832,
18446938-18447025,18447112-18447230,18448975-18449580,
18449803-18449898,18450232-18450422,18453287-18453416,
18453531-18453566
Length = 676
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 212 INRSTEHQATDATKTVNSDFRTLDYGKSIFSQRSHSTFT 96
+NR E +T S + LD+G + Q S+S FT
Sbjct: 29 LNREVEGSGGASTSAAASSSQPLDHGAGLVPQESNSMFT 67
>12_01_0937 - 9289999-9290046,9290123-9290458
Length = 127
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 162 INGFGRIGRLVLRASIDKGADVVAINDPFIGLD 260
+ G G IGR ++ AS+ G + P IGLD
Sbjct: 11 VGGTGHIGRRIVAASLAAGHPTSVLLRPEIGLD 43
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 141 IKCSKIGINGFGRIGRLVLRASIDKGADVVAIND 242
I S I GFG +G R +KG V+A+ D
Sbjct: 204 ISGSTFVIQGFGNVGSWAARIIHEKGGKVIALGD 237
>12_01_0947 -
9396320-9396483,9396822-9397025,9397769-9398009,
9399052-9399387
Length = 314
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 162 INGFGRIGRLVLRASIDKGADVVAINDPFIGLD 260
+ G G +GR V+ AS+ G + P IGLD
Sbjct: 11 VGGTGFVGRRVVAASLAAGHPTYVLLRPEIGLD 43
>11_06_0059 +
19691588-19691697,19692281-19692348,19692400-19692579,
19693267-19693573,19694079-19694559
Length = 381
Score = 26.6 bits (56), Expect = 8.5
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 84 GRGESER*VTSLRKYTLTIIKCSKIGINGFGRIGRLVLRASIDKGADVVAINDPF 248
GR S + V RK TLTI + S + G G V R KG+ ++DPF
Sbjct: 164 GRHRSRKHVEG-RKATLTIAEPSTVIAAGVSSRGHTVARQKQVKGS-AATVSDPF 216
>05_02_0030 +
5826065-5826092,5826307-5828309,5828412-5828732,
5828821-5828907,5828981-5829583,5829680-5829844,
5829941-5830235,5830320-5830534,5830621-5830926,
5831200-5831263,5831384-5831623,5831756-5831853
Length = 1474
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 132 LTIIKCSKIGINGFGRIGRLVLRASIDKGADVVAINDPFIGLD 260
LT I + ++G G+ R+ L ++ GADV ++DPF +D
Sbjct: 734 LTEIGQRGLNMSG-GQKQRIQLARAVYNGADVYLLDDPFSAVD 775
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,196,007
Number of Sequences: 37544
Number of extensions: 242370
Number of successful extensions: 738
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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