Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M16
(419 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 213 1e-56
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 212 2e-56
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 126 1e-30
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 88 6e-19
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 27 0.90
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 27 1.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 2.1
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 3.6
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 4.8
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 6.3
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 6.3
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 6.3
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 24 8.4
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 24 8.4
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 213 bits (519), Expect = 1e-56
Identities = 92/136 (67%), Positives = 115/136 (84%)
Frame = +2
Query: 11 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 190
F+TFFSETG GK+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 191 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLE 370
T+GKE+VD V D+IR++AD C+GLQGFL+FH LL+ERL+++Y KKSKL+
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQ 168
Query: 371 FAIYPEPQVSTAVVEP 418
F++YP PQVST+VVEP
Sbjct: 169 FSVYPAPQVSTSVVEP 184
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 212 bits (518), Expect = 2e-56
Identities = 89/139 (64%), Positives = 116/139 (83%)
Frame = +2
Query: 2 HEAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 181
++ F TFFSETG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYAR
Sbjct: 50 NDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYAR 109
Query: 182 GHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKS 361
GHYT+GKE++D VL+RIR++AD C+GLQGFL+FH LL+ERL+++YGKKS
Sbjct: 110 GHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKS 169
Query: 362 KLEFAIYPEPQVSTAVVEP 418
L+F++YP PQVST+VVEP
Sbjct: 170 NLQFSVYPAPQVSTSVVEP 188
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 126 bits (305), Expect = 1e-30
Identities = 57/139 (41%), Positives = 82/139 (58%)
Frame = +2
Query: 2 HEAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 181
HE N +F+E GK+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+
Sbjct: 44 HERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAK 103
Query: 182 GHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKS 361
GHYT G E+ D VLD +R+ A+ C LQGF + H LL+ ++ +Y +
Sbjct: 104 GHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRM 163
Query: 362 KLEFAIYPEPQVSTAVVEP 418
F++ P P+ S VVEP
Sbjct: 164 MATFSVAPAPKSSDTVVEP 182
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 87.8 bits (208), Expect = 6e-19
Identities = 46/138 (33%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Frame = +2
Query: 14 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGH 187
+ FF ++ +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G
Sbjct: 49 DVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG- 107
Query: 188 YTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKL 367
Y+ + I + ++D I + AD L+GF + H L+ERL+ Y KK
Sbjct: 108 YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQ 167
Query: 368 EFAIYPEPQ-VSTAVVEP 418
++++P Q VS VV+P
Sbjct: 168 TYSVFPNSQSVSDVVVQP 185
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 27.5 bits (58), Expect = 0.90
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = -2
Query: 328 HEERSETRTGATTERVEDEESLEACALVSEFADAVEDQVYDFLSNGVVTTSIVVCGILLT 149
HE+ + +TG ++ +++E ++A D E+QV + S G + VV LL
Sbjct: 108 HEKPARPQTGEGSDNEDEDEDIDALIEDLYSQDQEEEQVEEEESPGPAGAAKVVPEELLE 167
Query: 148 SDKLFWMKQLSV 113
+D + + + V
Sbjct: 168 TDPKYGLTESEV 179
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 36 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV 185
E+ F VP +S LNP S +TD +++ N+ + R+ T +++
Sbjct: 218 EVKDLFYVPLTSFLNPKHQKISRFRNTDLLYVEFNIDKIPRIWGITAVIL 267
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 2.1
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 12 STRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 191
ST ++ L ++ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 1269 STPITSSTALNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNT 1328
Score = 25.4 bits (53), Expect = 3.6
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 12 STRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 191
ST ++ L ++ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 501 STPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNT 560
Score = 25.4 bits (53), Expect = 3.6
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 12 STRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 191
ST ++ L ++ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 2613 STPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNT 2672
Score = 25.4 bits (53), Expect = 3.6
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 12 STRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 191
ST ++ L ++ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 2841 STPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNT 2900
Score = 25.4 bits (53), Expect = 3.6
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 12 STRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 191
ST ++ L ++ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 2937 STPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNT 2996
Score = 25.0 bits (52), Expect = 4.8
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 12 STRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 191
ST ++ L ++ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 993 STPITSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 1052
Score = 24.6 bits (51), Expect = 6.3
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 12 STRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 191
ST ++ L ++ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 1773 STPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 1832
Score = 24.6 bits (51), Expect = 6.3
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 12 STRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVT 188
ST ++ L S+ P+ SSS+LN +T S + +T S I ++ L P T+ VV
Sbjct: 3225 STAITSSSVLNSSTPITSSSVLNSSTPITSSTVVNT-STPITSSSVLNSSTPITSSTVVN 3283
Query: 189 T 191
T
Sbjct: 3284 T 3284
Score = 24.2 bits (50), Expect = 8.4
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 12 STRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 191
ST ++ + S+ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 837 STPITSSTVVNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 896
Score = 24.2 bits (50), Expect = 8.4
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 12 STRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 191
ST ++ + S+ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 2445 STPITSSTVVNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 2504
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 3.6
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -2
Query: 232 DAVEDQVYDFLSNGVVT-TSIVVC 164
DA DQ+ +++ NG++T T IV C
Sbjct: 68 DATIDQLQNYMENGILTSTDIVHC 91
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 4.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 96 RSALAHTDSCFIQNNLSLVRRMPQT 170
+S + HT++ NN SL+RR+ T
Sbjct: 605 KSLIQHTNNLLQSNNASLLRRLAAT 629
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 6.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 152 KEDAANNYARGHYTIGKEIVDLV 220
+E ANN+ RGH I K+ D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 24.6 bits (51), Expect = 6.3
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 331 LHEERSETRTGATTERVEDEESLEACALVSEFADAVEDQVYDFLS-NGVV 185
LH + + + ++ ED+ +C ++S AD + + L+ NG++
Sbjct: 1078 LHSQPIQNVSDVNNKKDEDDHEQTSCLIISGIADVFSENMSLLLNVNGIL 1127
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 24.6 bits (51), Expect = 6.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 352 AVVNGESLHEERSETRTGATTERVEDEESLE 260
AVVNG S H + + + + ESLE
Sbjct: 662 AVVNGNSQHHHNRDDASSGLSSNGSENESLE 692
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.2 bits (50), Expect = 8.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -2
Query: 382 IDSELQFRLLAVVNGESLHEERSETRTGATTERVEDEESLEACALVSE 239
+D E++ +LLA+ E E + E ++EE LE + + E
Sbjct: 445 VDPEIEAKLLALDEEEERLEREGYYDSDQEIEDADEEEVLEKASRIRE 492
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 24.2 bits (50), Expect = 8.4
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = -2
Query: 349 VVNGESLHEERSETRTGATTERVEDEESLEACALVSEFA---DAVEDQVYDFLSNGVVTT 179
+VN ES E A E +EDEE S D + D YD ++NGV T
Sbjct: 129 IVNNESA--EIIRMFNDAFNEVIEDEEKRVVDLYPSSLRTKIDELNDYFYDTVNNGVYKT 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,749,560
Number of Sequences: 5004
Number of extensions: 34554
Number of successful extensions: 184
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -