Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M15
         (198 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   1.8  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    23   4.2  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    23   7.4  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    23   7.4  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    22   9.7  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    22   9.7  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    22   9.7  

>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 118 NIIKLFSSS*LSTNGNKRQ*IFCIS*NECYYIELYETL 5
           + ++LFS+  +STN ++ +  F    N C  ++L  TL
Sbjct: 51  DFLELFSTMVISTNFSRNRYRFSYVENSCTLLQLLSTL 88


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 113 YVGFNKLKISVYLTIVCGSVRYF 181
           Y G++ L ISV +  +CGSV +F
Sbjct: 592 YFGYSLL-ISVLVFFLCGSVGFF 613


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 22  LYSNIHFMRYRKSTVFYYR 78
           +Y+ +H++R+  +T+ YYR
Sbjct: 278 MYAQVHYIRF--NTLLYYR 294


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 181 EIPNRSTYNSEIDRDF*FIETNIIKLFSSS 92
           +IP+   Y  E  +DF  +   I+ +F+S+
Sbjct: 631 QIPDELLYKREFHKDFSKLYKEILDIFNST 660


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +2

Query: 125 NKLKISVYLTIVCGSVRYFW 184
           +++K+++  T +CGS  ++W
Sbjct: 30  HQVKVAIKATGICGSDVHYW 49


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 107 FNYVGFNKLKISVY 148
           FNY+ FNKL +S +
Sbjct: 6   FNYLRFNKLCVSFF 19


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 956

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 8  GFIQFYIVTFIL*DTENLLSF 70
          GF +FYI T +L + E + SF
Sbjct: 11 GFFKFYIDTALLLNAEFISSF 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 768,700
Number of Sequences: 5004
Number of extensions: 11321
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)