Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M15
         (198 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   0.46 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   4.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   4.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   4.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   4.3  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 0.46
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +2

Query: 23  YIVTFIL*DTENLLSFITVCR*LARTK*FNYVGFNKLKISVYLTIVCG---SVRYFWTKW 193
           Y+V F+     N+++ I + R  +     NY  FN L +S  L ++ G    +  FW ++
Sbjct: 40  YVVIFVTGFVGNIITCIVIWRNPSMQTPTNYYLFN-LAVSDLLFLILGLPFELSVFWQQY 98


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 149 LTIVCGSVRYFWTKWN 196
           + +V  S   FW +WN
Sbjct: 312 IILVTSSFITFWLEWN 327


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 149 LTIVCGSVRYFWTKWN 196
           + +V  S   FW +WN
Sbjct: 281 IILVTSSFITFWLEWN 296


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 149 LTIVCGSVRYFWTKWN 196
           + +V  S   FW +WN
Sbjct: 332 IILVTSSFITFWLEWN 347


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 149 LTIVCGSVRYFWTKWN 196
           + +V  S   FW +WN
Sbjct: 281 IILVTSSFITFWLEWN 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,222
Number of Sequences: 438
Number of extensions: 763
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)