Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M14
         (333 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IC40 Cluster: Putative uncharacterized protein PF07_0...    31   6.7  
UniRef50_Q23FZ0 Cluster: Sec1 family protein; n=1; Tetrahymena t...    31   6.7  

>UniRef50_Q8IC40 Cluster: Putative uncharacterized protein
           PF07_0010; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF07_0010 - Plasmodium
           falciparum (isolate 3D7)
          Length = 1843

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -2

Query: 203 HCLKHGLKTTLDLLSKIFSLYI*HLC*DARLNFLHSVIRPQTKEV*RLNINGII 42
           H L   +K   +L  K+FS+Y   +  +   NF+H +    +K+  ++NIN ++
Sbjct: 371 HKLLQHIKCVNNLKHKMFSIYFNRIKENNETNFVHFLFSDDSKKTNQININELL 424


>UniRef50_Q23FZ0 Cluster: Sec1 family protein; n=1; Tetrahymena
           thermophila SB210|Rep: Sec1 family protein - Tetrahymena
           thermophila SB210
          Length = 2209

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +1

Query: 13  LIFS*NY*YFIIPFMFNL*TSLVCGLITLCKKLRRAS*QRCQIY---RENILDNKSNVVF 183
           L+F  N   FIIP M  L    + G   +C  LR+ + ++  ++     NILD   N +F
Sbjct: 397 LVFGLNGRGFIIPLMIRLKLENMFGEFGVCSHLRKVNQEKDYLFFSNEGNILDISEN-LF 455

Query: 184 KPCFKQ 201
           K  F+Q
Sbjct: 456 KTVFQQ 461


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 281,630,281
Number of Sequences: 1657284
Number of extensions: 4505983
Number of successful extensions: 7566
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7564
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 10394654088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)