Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M14
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   0.75 
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   2.3  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   4.0  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    24   7.0  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    24   7.0  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.1 bits (57), Expect = 0.75
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 257 IKCMIVAAILKIFSHFMVHCLKHGLKTTLDLLSKIFSLY 141
           + C I +  L  F HF + C  + L  +L  L   ++LY
Sbjct: 51  LPCSIYSHTLHFFHHFTIACYHYSLCLSLVALLLFYTLY 89


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 47  YRLCLTSKLP*FVVLLHYVK 106
           Y LCL  K+   +V+LH++K
Sbjct: 113 YNLCLNQKIAFVLVMLHFMK 132


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 241 LRPYSRFFLISWFIV*STV*KRHWIYYLRYFL 146
           + P +R FL+SW  +  ++    +I YL + L
Sbjct: 216 INPNTRMFLVSWIRLLDSIPDLEFISYLPFLL 247


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 267 FVSHQMYDSCGHTQDFFS 214
           F+ + MY+ CGH+ DF++
Sbjct: 226 FLGYNMYEWCGHS-DFYT 242


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 5   EGCLFSVRIINILLYRLCLTSKLP*FVVLLHYVKN 109
           +GCL  V+I+ I++  L  T+ +     L  Y+K+
Sbjct: 145 QGCLGKVKIVPIMIGALTSTTMMAAAKFLSQYIKD 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,257,699
Number of Sequences: 5004
Number of extensions: 21887
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)