Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M14
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0875 - 28434894-28435082,28435173-28435247,28435399-284354...    26   6.4  
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631...    26   8.5  
04_04_0231 - 23790745-23791131,23791207-23792382                       26   8.5  
03_02_0435 - 8406262-8406419,8406499-8406547,8406577-8407458,840...    26   8.5  

>03_05_0875 -
           28434894-28435082,28435173-28435247,28435399-28435490,
           28435721-28435835,28436019-28436188,28436237-28436310,
           28436397-28436553,28436658-28436730,28436898-28436960,
           28437067-28437341,28437710-28437816,28437884-28438788,
           28439742-28440032
          Length = 861

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 103 KKLRRAS*QRCQIYRENILDNKSNVVFKPC 192
           K LR      C I  +NIL NK N + K C
Sbjct: 687 KHLRHCGVLHCDIKPDNILVNKDNNLLKLC 716


>12_02_0522 -
           19960092-19960595,19962737-19962880,19963042-19963131,
           19963215-19963320,19963400-19963574,19963849-19963951,
           19964382-19964636,19964726-19964803,19964908-19965000,
           19965091-19965222,19965898-19966002,19966127-19966201,
           19966284-19966340,19966419-19966532,19966613-19966756,
           19966886-19966969,19967071-19967164,19967244-19967369,
           19967507-19967580,19967672-19967875,19968234-19968388,
           19968860-19968947,19969505-19969730,19970235-19970286,
           19970766-19970958,19973221-19973314,19973744-19973788,
           19974874-19974896
          Length = 1210

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 91  ITLCKKLRRAS*QRCQIYREN 153
           ITLCK+LRR     C+ +R N
Sbjct: 108 ITLCKELRRIKVLLCKHFRNN 128


>04_04_0231 - 23790745-23791131,23791207-23792382
          Length = 520

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 8   GCLFSVRIINILLYRLCLTSKLP 76
           GC     I N+LL+ LC   ++P
Sbjct: 327 GCCLDSTICNVLLHALCCEDRIP 349


>03_02_0435 -
           8406262-8406419,8406499-8406547,8406577-8407458,
           8408976-8409127,8410346-8410616
          Length = 503

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 263 YLIKCMIVAAILKIFSHFMVHCLKHGLKT 177
           YL+   +V  I  +F+   V CL+H  +T
Sbjct: 372 YLVVVPVVVVIYSLFAEKAVACLRHSRRT 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,110,917
Number of Sequences: 37544
Number of extensions: 108430
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)