Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M14
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002198-3|AAF99933.1|  208|Caenorhabditis elegans Hypothetical ...    28   1.4  
AF002198-2|AAF99932.1|  232|Caenorhabditis elegans Hypothetical ...    28   1.4  
U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    27   4.3  
AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    27   4.3  
U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z99281-21|CAE18023.1|  181|Caenorhabditis elegans Hypothetical p...    26   7.5  

>AF002198-3|AAF99933.1|  208|Caenorhabditis elegans Hypothetical
           protein F35F10.6 protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 269 DSYLIKCMIVAAILKIFSHFMVHCLKHGLKTTLDLLSKIF 150
           +SY+    +V  I  I S + +H   H LK T+ ++   F
Sbjct: 54  ESYINVDQVVQEIANIQSRYAIHLSSHSLKNTIQIVRTAF 93


>AF002198-2|AAF99932.1|  232|Caenorhabditis elegans Hypothetical
           protein F35F10.7 protein.
          Length = 232

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 269 DSYLIKCMIVAAILKIFSHFMVHCLKHGLKTTLDLLSKIFS 147
           +SY+    +V  + KI S   +H   H LK T+ ++   FS
Sbjct: 75  ESYVKVDQVVQEMAKITSKCAIHLSSHALKNTIQIVRTAFS 115


>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 251 CMIVAAILKIFSHFMVHCLKHGLKTTLDLLSKIFSLY 141
           C  + AI ++ +H +  CL   +   + LLS I SLY
Sbjct: 251 CFFIQAI-RLITHPIFECLICAIPAPIPLLSSIISLY 286


>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +2

Query: 5   EGCLFSVRIINILLYRLCLTSKLP*FVVLLHYVKN*DARLNKDVKYIEKIS 157
           +G L SV  + +    + +T+ L  F ++ HYV+   A +  +V+Y +  S
Sbjct: 6   KGSLRSVAFVAVTFSTVAVTAVLIAFPLVFHYVQTLQASVQGEVEYCKSRS 56


>U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical
           protein F21C10.12 protein.
          Length = 349

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 181 KRHWIYYLRYFLYIFDIF 128
           + HW YY+ YF+ I  IF
Sbjct: 176 EEHWWYYISYFIIISVIF 193


>Z99281-21|CAE18023.1|  181|Caenorhabditis elegans Hypothetical
           protein Y57G11C.40 protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +1

Query: 100 CKKLRRAS*QRCQIYRENILDNKSNVVFKPCFKQ*TMK*EKILSMAATIIHLMRYESHHI 279
           C K  +A+ Q C  Y E +   + N+  +P   Q  +  EK  + +  II +   +  HI
Sbjct: 111 CAKSTKAAKQSCSSYSEFVTCIEENLAKQPSCTQEDV--EKFKTFSNLIIEICNLKMDHI 168

Query: 280 QLHCHF 297
           +    F
Sbjct: 169 KAFSDF 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,739,953
Number of Sequences: 27780
Number of extensions: 116868
Number of successful extensions: 228
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)