Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M14
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   0.56 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   1.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   9.1  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        20   9.1  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 0.56
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 128 KDVKYIEKIS*IINPMSFL 184
           KDV  I+K S II P+SF+
Sbjct: 459 KDVNIIDKYSRIIFPVSFM 477


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 220 KILSMAATIIHLMRYESHHIQLHCHF 297
           KI   A  I+   R    H++ HC+F
Sbjct: 224 KIFCAARRIVLEERRAQSHLEAHCYF 249


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 140 YIEKIS*IINPMSFL 184
           YI+K+S    P SFL
Sbjct: 358 YIDKVSRFFFPFSFL 372


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 310 FLKVRSDNVIECDVIRISSN 251
           F ++R D ++  DV+ +SSN
Sbjct: 36  FHEMRPDYLLPKDVVVVSSN 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,394
Number of Sequences: 438
Number of extensions: 1512
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)