Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M13
(380 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949... 28 2.9
11_04_0179 + 14562288-14562860,14562874-14563489,14563529-145636... 27 5.0
07_03_0262 + 15944259-15944514,15945524-15945597,15946320-159464... 27 5.0
01_06_1791 - 39907362-39907453,39907682-39907753,39907941-399080... 27 5.0
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 27 5.0
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 27 6.6
11_06_0119 + 20321687-20323624 26 8.7
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496... 26 8.7
04_03_0353 - 14785648-14787213 26 8.7
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396... 22 9.2
>10_06_0006 -
9496990-9497592,9497695-9497802,9497884-9497997,
9498170-9498219,9498346-9498434,9498542-9498738,
9498877-9499038,9499337-9499455,9499579-9499666,
9499744-9499849,9499968-9500056,9500167-9500319,
9500434-9500526,9500625-9500691,9500811-9500923,
9501544-9501639,9501782-9501961
Length = 808
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +1
Query: 40 PGQCRYVLIHDYVDR---NFTVLLQLQNGQPKALVLEDK-SGTIIELKDNGQ-VTLNGAA 204
P Q Y + ++++ N +L + G P + + G++ + G VTL+ A
Sbjct: 679 PSQQLYHVPRSFLNKGEPNTLILFEEAGGDPSEVAVRTVVEGSVCASAEVGDTVTLSCGA 738
Query: 205 HGFPVIEKDVFAFKQTNGRIG 267
HG + DV +F GR G
Sbjct: 739 HGRTISSVDVASFGVARGRCG 759
>11_04_0179 +
14562288-14562860,14562874-14563489,14563529-14563658,
14563694-14564540
Length = 721
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 113 TDSPRHWFWRTRAEPSLSLKTMDR*H*MELPTAS 214
T PR+ +WR +P+LS K +++ + P+AS
Sbjct: 662 TTMPRNRYWRKPVKPTLSAKKLEQSAQRKPPSAS 695
>07_03_0262 +
15944259-15944514,15945524-15945597,15946320-15946400,
15946621-15946713,15946946-15947014,15947578-15947697,
15948342-15948413,15948624-15948701,15949463-15949654
Length = 344
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 171 RQWTGDTEWSCPRLPCH*EG--RIRVQTD 251
R W T WSC R C G R+R+ T+
Sbjct: 51 RDWWWSTSWSCWRKACRKSGGDRLRILTE 79
>01_06_1791 -
39907362-39907453,39907682-39907753,39907941-39908045,
39908212-39908302,39908787-39908849,39909448-39909497,
39909632-39909716
Length = 185
Score = 27.1 bits (57), Expect = 5.0
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +1
Query: 118 QPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTNGRIGLGSKYGLMAF 297
+P++ L+ G I++ G +T +G+ D F F NG++ G GL+
Sbjct: 47 KPESCTLQAHKGDKIKVHYRGSLT-DGSVFDSSYDRGDPFEFTLGNGQVIKGWDQGLLGM 105
Query: 298 CTSK 309
C +
Sbjct: 106 CVGE 109
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.1 bits (57), Expect = 5.0
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 109 QNGQPKALVLEDKSGTIIELKDNG---QVTLNGAAHGFPVIEKDVFAFK 246
++ Q + LVL+DKS + + KD Q NG V +KD+ A +
Sbjct: 363 EDKQKEILVLQDKSNMMQDKKDQNNLEQTNSNGGEEELQVKDKDLVALE 411
>07_03_1339 + 25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -1
Query: 317 TSSLEVQKAINPYLEPRPIRPLVCLNANTSFSMTGKP 207
+S+ + ++N + P + L+ LN+NTSF +GKP
Sbjct: 1264 SSNSSLMDSVNTAIMPSSLDNLL-LNSNTSFLYSGKP 1299
>11_06_0119 + 20321687-20323624
Length = 645
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 113 TDSPRHWFWRTRAEPS-LSLKTMDR*H*MELPTASLSLRRTYSRSNRPTDV 262
TD HWFW T ++ + L + + + + ++SL R Y SN+ T V
Sbjct: 475 TDQLPHWFWTTFSKATDLVISSNNISGSLPANMETMSLERLYLGSNQITGV 525
>08_02_0503 -
17848739-17849004,17849109-17849268,17849368-17849691,
17849787-17850209
Length = 390
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 317 TSSLEVQKAINPYLEPRPIRPLVCLNANTSFS 222
TS V + +NPYLE ++PLV +FS
Sbjct: 335 TSDGSVLEKLNPYLESGKVKPLVDPKGPFAFS 366
>04_03_0353 - 14785648-14787213
Length = 521
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 121 PKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTNGR 261
P+A VLE ++ + TL A G P++ FA +QTN R
Sbjct: 403 PQAEVLEHEAVGVFLTHSGWNSTLESIAGGVPMVCWPFFAEQQTNCR 449
>12_01_0500 +
3966456-3968556,3968640-3969087,3969524-3969718,
3969891-3970119
Length = 990
Score = 22.2 bits (45), Expect(2) = 9.2
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1
Query: 10 ISARGKHLTFPG 45
+ G+HLTFPG
Sbjct: 544 VKVSGEHLTFPG 555
Score = 22.2 bits (45), Expect(2) = 9.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 148 SGTIIELKDNGQVTLNGAAHGFPVIEKDV 234
SG + G +NGAAH +IE+ V
Sbjct: 547 SGEHLTFPGGGTQFINGAAHYIDLIEEAV 575
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,236,311
Number of Sequences: 37544
Number of extensions: 202411
Number of successful extensions: 490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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