Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M13
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ...    29   1.1  
U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop heli...    29   1.5  
AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.      29   1.5  
Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    28   2.6  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    28   2.6  
AF002198-5|AAF99934.2|  329|Caenorhabditis elegans Serpentine re...    27   3.4  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    27   4.5  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    27   4.5  
Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
           protein R09A1.1 protein.
          Length = 1121

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +1

Query: 40  PGQCRYVLIHDYVDRNFTVLLQL--QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGF 213
           P QCR     DY  + +  +++    +GQP     E+K   +I+    G++  N   HG 
Sbjct: 672 PRQCRDF---DYNQQGYHAIMRAIEDSGQPVLWADENKHSAVIQ----GELQFNQNQHGI 724

Query: 214 PVIEKDVFAFKQTNG 258
            VIE+ +   K T G
Sbjct: 725 EVIEQFLQNIKSTIG 739


>U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop helix
           protein 8 protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 184 PVHCL*AQ*WFRSCPP 137
           P HCL  Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149


>AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 184 PVHCL*AQ*WFRSCPP 137
           P HCL  Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149


>Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical
           protein F16H6.1 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 109 QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTN 255
           Q+G PK+ + +D+SG      D G+   NG A GFP++E     +  TN
Sbjct: 98  QSGSPKSCLWDDQSG------DAGK--YNGFAPGFPLLEIGSCVYVPTN 138


>Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical
           protein F49C5.2 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 211 FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 351
           FP+     + F  TN  IG      L +F     E C++  N  YLG
Sbjct: 125 FPLWHMKKYRFNPTNFGIGFSLLIALFSFAVLLPEGCHYLFNRDYLG 171


>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 284 PYLEPRPIRPLVCLNANTSFSMT 216
           P  +PRPIRP+ C N  T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 284 PYLEPRPIRPLVCLNANTSFSMT 216
           P  +PRPIRP+ C N  T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 122  GCPFCSCRSTVKFLS 78
            GCP C CRS  +FL+
Sbjct: 1230 GCPICDCRSPCEFLN 1244


>AF002198-5|AAF99934.2|  329|Caenorhabditis elegans Serpentine
           receptor, class x protein122 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 211 FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 351
           FP+     + F  TN  IG+     + +F     E C++  N  YLG
Sbjct: 125 FPIWHMKKYRFNPTNIGIGVALLIAVFSFAVLLPEGCHYLFNRDYLG 171


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 22  GKHLTFPGQCRYVLIHDYVD 81
           G H     QCRYVL+ DY D
Sbjct: 717 GTHTYRDNQCRYVLVTDYND 736


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 22  GKHLTFPGQCRYVLIHDYVD 81
           G H     QCRYVL+ DY D
Sbjct: 717 GTHTYRDNQCRYVLVTDYND 736


>Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical
           protein R04B5.6 protein.
          Length = 347

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 154 TIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQT-NGRI 264
           T IEL  +G++ L+G       +E+ + AFK+T NG +
Sbjct: 303 TAIELISSGKLDLSGLTRAHYKLEESLEAFKRTQNGDV 340


>Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical
           protein F52E10.1 protein.
          Length = 1201

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 314 SSLEVQKAINPYLEPRPIRPLVCLNANTSFSMTG 213
           + +E+QKA  PYL    +  L  LN  + +  TG
Sbjct: 176 TDIEIQKAETPYLHRNVLNVLGSLNRASQYYCTG 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,347,167
Number of Sequences: 27780
Number of extensions: 162155
Number of successful extensions: 452
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)