Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M12
(426 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 215 2e-57
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 215 2e-57
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 215 2e-57
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 116 2e-27
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 113 1e-26
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 72 4e-14
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 52 5e-08
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 43 2e-05
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 39 4e-04
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 38 7e-04
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 38 7e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 27 0.077
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 30 0.17
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 29 0.30
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 0.70
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 0.70
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 27 1.6
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 2.1
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 2.8
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 2.8
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 4.9
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 4.9
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 6.5
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s... 25 6.5
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 6.5
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 6.5
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 24 8.6
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 24 8.6
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 8.6
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 24 8.6
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 215 bits (526), Expect = 2e-57
Identities = 99/107 (92%), Positives = 103/107 (96%)
Frame = +2
Query: 104 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVL 283
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 284 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTS 424
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTS
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTS 107
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 215 bits (526), Expect = 2e-57
Identities = 99/107 (92%), Positives = 103/107 (96%)
Frame = +2
Query: 104 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVL 283
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 284 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTS 424
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTS
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTS 107
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 215 bits (526), Expect = 2e-57
Identities = 99/107 (92%), Positives = 103/107 (96%)
Frame = +2
Query: 104 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVL 283
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 284 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTS 424
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTS
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTS 107
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 116 bits (278), Expect = 2e-27
Identities = 52/100 (52%), Positives = 69/100 (69%)
Frame = +2
Query: 125 INIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 304
+++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + ER
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Query: 305 ERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTS 424
RG+T+D+A FE+ K I DAPGHRDFI MI G S
Sbjct: 238 ARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGAS 277
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 113 bits (271), Expect = 1e-26
Identities = 49/103 (47%), Positives = 72/103 (69%)
Frame = +2
Query: 116 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKLK 295
K H+NIV IGHVD+GKST G++++ G +D+RT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 296 AERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTS 424
ERE+G T+++ FET +++DAPGH+ ++ NMI G S
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGAS 338
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 71.7 bits (168), Expect = 4e-14
Identities = 42/105 (40%), Positives = 57/105 (54%)
Frame = +2
Query: 110 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDK 289
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 290 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTS 424
E+ RGITI A ++ET + +D PGH D+IKNMITG +
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 51.6 bits (118), Expect = 5e-08
Identities = 32/90 (35%), Positives = 45/90 (50%)
Frame = +2
Query: 128 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 307
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 308 RGITIDIALWKFETGKYYVTIIDAPGHRDF 397
RGITI+ A F + +ID PGH DF
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADF 106
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 42.7 bits (96), Expect = 2e-05
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Frame = +2
Query: 128 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 307
N VI H+D GKST + ++ G I+E + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 308 RGITIDI----ALWKFETGKYYVTIIDAPGHRDF 397
RGIT+ ++ + Y + +ID PGH DF
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDF 137
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 38.7 bits (86), Expect = 4e-04
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Frame = +2
Query: 128 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 307
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 308 RGITIDIA----LWK---------------FETGKYYVTIIDAPGHRDF 397
+GITI A W+ FE Y + IID PGH DF
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEK-SYNINIIDTPGHIDF 158
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 37.9 bits (84), Expect = 7e-04
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Frame = +2
Query: 104 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTI--EKF-EKEAQEMGKGSFKYA 274
MGK N+ VI HVD GKST T L+ K G I +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 275 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDF 397
+ L AE D+ + + V +ID+PGH DF
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDF 111
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 37.9 bits (84), Expect = 7e-04
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Frame = +2
Query: 104 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTI--EKF-EKEAQEMGKGSFKYA 274
MGK N+ VI HVD GKST T L+ K G I +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 275 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDF 397
+ L AE D+ + + V +ID+PGH DF
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDF 111
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.5 bits (58), Expect(2) = 0.077
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 251 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETGKYYVTIIDAPGHRDF 397
GK + A+ + + GIT I + F+ G ++T +D PGH F
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAF 233
Score = 22.2 bits (45), Expect(2) = 0.077
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 131 IVVIGHVDSGKST 169
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 29.9 bits (64), Expect = 0.17
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 116 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKY 271
KV+ +++I ++D G L G ID+ T + +K+A+ G+ +F+Y
Sbjct: 591 KVNAQVMLIKNIDD--QLVNGSLGKVIGFIDDETYQMEKKDAEMQGRNAFEY 640
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.30
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 284 DKLKAER-ERGITIDIALWKFETGKYYV--TIIDAPGHRDFIKN 406
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.9 bits (59), Expect = 0.70
Identities = 25/96 (26%), Positives = 39/96 (40%)
Frame = +2
Query: 137 VIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 316
++GHVD+GK+ +L + + E Q++G F + K K ++G
Sbjct: 489 ILGHVDTGKTKLLDNL--RRSNVQEGEAGGI---TQQIGATYFPIESIKQKTKVVNKKG- 542
Query: 317 TIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTS 424
K + + IID PGH F GTS
Sbjct: 543 -------KLQYNIPGLLIIDTPGHESFTNLRSRGTS 571
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 0.70
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = +2
Query: 128 NIVVIGHVDSGKSTTTGHLIYKCGGIDER---TIEKFEKEAQEMGKG----SFKYAWVLD 286
N ++ HVD GK+T L+ G I + T+ + E+ +G S +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 287 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDF 397
+ E+ + D Y + +ID+PGH DF
Sbjct: 81 VISQNDEKRVEKD----------YLINLIDSPGHVDF 107
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 26.6 bits (56), Expect = 1.6
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 260 SFK-YAWVLDKLKA-ERERGITID-IALWKFETGKYYVTIIDAPGHRDFIKNMIT 415
+FK Y L+ LK E++ G++ID + F+ G + + PG+ DF+ N ++
Sbjct: 3 AFKPYTEALEVLKKYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNVS 57
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 2.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 195 AVVSTNVPSKSSRRKPRKWVRVPS 266
A++S + K + +P KWV VPS
Sbjct: 224 ALISNGLKVKETSEEPEKWVVVPS 247
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 152 DSGKSTTTGHLIYKCGGIDE 211
+S K TT GH++ +C IDE
Sbjct: 1881 NSVKFTTEGHILLRCMAIDE 1900
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 2.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 345 SNFQRAISMVIPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMV 214
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 4.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 98 PKMGKEKVHINIVVIGHVDSGKST 169
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 4.9
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 316 HHRY-CSLEVRNRQILCHHH 372
HH++ C L V+N+++ H H
Sbjct: 196 HHKFFCDLCVKNKKVFTHEH 215
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 24.6 bits (51), Expect = 6.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 315 IPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMVRSSIPPH 193
IP+ A S+ N++ + ++ LP + S V+ +P H
Sbjct: 173 IPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 24.6 bits (51), Expect = 6.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 336 QRAISMVIPRSRSAFSLSNTQAYLKEPLPISWASFSN 226
Q A+S +IP++RSA N LK L S+ + N
Sbjct: 33 QAAVSQLIPQARSAIQTGNALQGLKTLL--SYVPYGN 67
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 24.6 bits (51), Expect = 6.5
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -1
Query: 378 ASMMVT*YLPVSNFQRAISMVIPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMVRSSIP 199
AS + Y ++ R ++ + P +R + S YL+ PL S S S + +R+SIP
Sbjct: 309 ASTALNSYSTPNSVSRKLTNLTPAARRLVARS----YLRSPLHGSSPSASRHTALRTSIP 364
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 6.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 134 VVIGHVDSGKSTTTGHLIYKCGGIDERTI 220
+V+GH GK+T +Y+ G + I
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAGWASQNGI 73
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 24.2 bits (50), Expect = 8.6
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -3
Query: 412 DHVLDEISVSRSVDDGDIVFAGFELP 335
DH L + ++ + D ++FAG+++P
Sbjct: 38 DHTLANMLANQLLSDERVLFAGYKVP 63
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 187 LQMRWYRRTYHRKVREGSPGNG*GFLQVRLGIG 285
+ M W R+ HR +P G L V G+G
Sbjct: 165 VMMSWERKIMHRSAEIIAPTKGRRVLNVGFGLG 197
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 131 IVVIGHVDSGKSTTTGHLIYKC 196
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 24.2 bits (50), Expect = 8.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 382 WTQRFHQEHDHWN 420
W Q F Q+H +WN
Sbjct: 258 WQQSFLQDHGYWN 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,432
Number of Sequences: 5004
Number of extensions: 33925
Number of successful extensions: 139
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -