Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M10
         (332 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   3.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   9.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   9.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   9.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   9.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   9.1  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 86  YYLVINTRDHT 54
           YYLV+   DHT
Sbjct: 290 YYLVLENTDHT 300


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 215 SCASVYPYRRCAPATVVSLAFPYSLCYFNVLKFST 111
           S  S +P R      +  + FP    +FN+  +ST
Sbjct: 403 SWLSKFPTRSKRIDVISRIFFPIVFAFFNLAYWST 437


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 215 SCASVYPYRRCAPATVVSLAFPYSLCYFNVLKFST 111
           S  S +P R      +  + FP    +FN+  +ST
Sbjct: 403 SWLSKFPTRSKRIDVISRIFFPIVFAFFNLAYWST 437


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 252 LSSVAAVTCTTFFLRLGVPLPPMRTCDCSFFSFSVFIML 136
           LS    ++ T FFL L   +PP          F +F M+
Sbjct: 274 LSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMI 312


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 16  PKHVRTIKLHGKLV 57
           P H R +KL G ++
Sbjct: 648 PDHKRIVKLRGSII 661


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 16  PKHVRTIKLHGKLV 57
           P H R +KL G ++
Sbjct: 686 PDHKRIVKLRGSII 699


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,121
Number of Sequences: 438
Number of extensions: 1625
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)