Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M09
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    23   4.0  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    23   5.3  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    22   9.3  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    22   9.3  

>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 140 NKVLNI*TYNNYNWRIY 90
           +K+LNI  Y + +WRI+
Sbjct: 139 SKILNISKYKSSHWRIF 155


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 110 NYNWRIYFKKKY 75
           N NW I++KK+Y
Sbjct: 187 NCNWPIFYKKQY 198


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 131 LNI*TYNNYNWRIYFKKK 78
           L++  YN  NW+ + K+K
Sbjct: 47  LSLLNYNEDNWKYFLKEK 64


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -2

Query: 167 PQTIISHPKNKVLNI*TYNNYNWRIYFKKKYHSM*FEIISK 45
           P  I S+   K L I  Y       Y   K H +  + ISK
Sbjct: 497 PHNIASYTTIKELGIGAYGQVKLATYKSNKVHEVILKSISK 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,084
Number of Sequences: 5004
Number of extensions: 8662
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)