Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M09
         (180 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical ...    26   3.1  
Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical ...    25   5.4  

>AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical
           protein F07G11.3 protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 8   TRMNSFKYYFDLI*KLSQITYYDTFF*NK 94
           +++   +YY DL+ K     YYD F+ N+
Sbjct: 444 SKLPRIRYYSDLVLKCYNEKYYDLFYNNR 472


>Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 164 QTIISHPKNKVLNI*TYNNYNWRIYFKK 81
           ++I+ +PK    N    NN+NW+I+ KK
Sbjct: 253 ESIVENPKR---NTFCTNNFNWKIFRKK 277


>Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 164 QTIISHPKNKVLNI*TYNNYNWRIYFKK 81
           ++I+ +PK    N    NN+NW+I+ KK
Sbjct: 253 ESIVENPKR---NTFCTNNFNWKIFRKK 277


>AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical
           protein F07G11.4 protein.
          Length = 499

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 8   TRMNSFKYYFDLI*KLSQITYYDTFF*NKFS 100
           +++   +YY DL+ K     YYD ++ N+ S
Sbjct: 414 SKLPRIRYYSDLVLKCYNEKYYDLYYSNRKS 444


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,511
Number of Sequences: 27780
Number of extensions: 43370
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)