Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M08
         (280 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|...    84   7e-16
UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Euka...    80   8e-15
UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukary...    76   2e-13
UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ost...    58   4e-08
UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Euk...    48   3e-05
UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; ...    47   7e-05
UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S riboso...    44   7e-04
UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1; Enceph...    39   0.025
UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3; Eukary...    36   0.13 
UniRef50_O59441 Cluster: 50S ribosomal protein L15P; n=7; Euryar...    35   0.30 
UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; ...    34   0.53 
UniRef50_Q8TVB7 Cluster: 50S ribosomal protein L18e; n=12; Archa...    31   6.6  
UniRef50_Q9X1J0 Cluster: 50S ribosomal protein L15; n=44; Bacter...    30   8.7  

>UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4;
           Bilateria|Rep: Ribosomal protein L27a - Ascaris suum
           (Pig roundworm) (Ascaris lumbricoides)
          Length = 133

 Score = 83.8 bits (198), Expect = 7e-16
 Identities = 43/70 (61%), Positives = 49/70 (70%)
 Frame = -1

Query: 280 WTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXLPKQPVIVKAKFFSKTAEQKIK 101
           W+LVSE+ R  YA   D K PVI++VKA          LPKQPVIVKAKFFS+TAEQKIK
Sbjct: 65  WSLVSEKTRTTYAEKKD-KAPVIDVVKAGYFKVLGKGLLPKQPVIVKAKFFSRTAEQKIK 123

Query: 100 AVGGVCVLSA 71
            VGG C+L A
Sbjct: 124 GVGGACILVA 133


>UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204;
           Eukaryota|Rep: 60S ribosomal protein L27a - Homo sapiens
           (Human)
          Length = 148

 Score = 80.2 bits (189), Expect = 8e-15
 Identities = 39/70 (55%), Positives = 48/70 (68%)
 Frame = -1

Query: 280 WTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXLPKQPVIVKAKFFSKTAEQKIK 101
           WTLVSEQ R+  A    G  P+I++V++          LPKQPVIVKAKFFS+ AE+KIK
Sbjct: 79  WTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIK 138

Query: 100 AVGGVCVLSA 71
           +VGG CVL A
Sbjct: 139 SVGGACVLVA 148


>UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3;
           Eukaryota|Rep: 60S ribosomal protein L27a - Tetrahymena
           thermophila
          Length = 149

 Score = 75.8 bits (178), Expect = 2e-13
 Identities = 39/70 (55%), Positives = 48/70 (68%)
 Frame = -1

Query: 280 WTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXLPKQPVIVKAKFFSKTAEQKIK 101
           W+LVS+  R KYA     KVPVI++ KA          LP QPV+VKAK+FSKTAE++I 
Sbjct: 81  WSLVSDATRQKYAEDKK-KVPVIDVTKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERRIV 139

Query: 100 AVGGVCVLSA 71
           AVGG CVL+A
Sbjct: 140 AVGGACVLTA 149


>UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2;
           Ostreococcus|Rep: 60s ribosomal protein L15/L27 -
           Ostreococcus tauri
          Length = 198

 Score = 58.0 bits (134), Expect = 4e-08
 Identities = 30/70 (42%), Positives = 41/70 (58%)
 Frame = -1

Query: 280 WTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXLPKQPVIVKAKFFSKTAEQKIK 101
           WTLV  + R + A  T  + PVI++             LP QPV+VK ++ SK AE+KIK
Sbjct: 130 WTLVGTEKREECAKNTS-QAPVIDLTDHGIFKLLGKGQLPNQPVVVKCRYISKLAEKKIK 188

Query: 100 AVGGVCVLSA 71
            VGG C+L+A
Sbjct: 189 EVGGACILTA 198


>UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56;
           Eukaryota|Rep: 60S ribosomal protein L27a-2 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 146

 Score = 48.4 bits (110), Expect = 3e-05
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = -1

Query: 280 WTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXLPK-QPVIVKAKFFSKTAEQKI 104
           W+LV E  + K  S+ D  VP+I++ +           LP+ +P +VKAK  SKTAE+KI
Sbjct: 79  WSLVPEDVKAK--SSKDN-VPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKI 135

Query: 103 KAVGGVCVLSA 71
           K  GG  VL+A
Sbjct: 136 KEAGGAVVLTA 146


>UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 187

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 30/70 (42%), Positives = 38/70 (54%)
 Frame = -1

Query: 280 WTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXLPKQPVIVKAKFFSKTAEQKIK 101
           WTLV  + R K  +A   +VPVI+ + A          LP  P IVKA++ S  AE+KIK
Sbjct: 119 WTLVPAEQR-KGLTADSTEVPVIDTLAAGYGKVLGKGRLPALPCIVKARWVSSLAEKKIK 177

Query: 100 AVGGVCVLSA 71
             GGV  L A
Sbjct: 178 EAGGVVKLVA 187


>UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S ribosomal
           protein L27a; n=1; Rattus norvegicus|Rep: PREDICTED:
           similar to 60S ribosomal protein L27a - Rattus
           norvegicus
          Length = 86

 Score = 44.0 bits (99), Expect = 7e-04
 Identities = 20/31 (64%), Positives = 25/31 (80%)
 Frame = -1

Query: 163 PKQPVIVKAKFFSKTAEQKIKAVGGVCVLSA 71
           PKQPV+VKA+  S+ AE+KI+ VGG CVL A
Sbjct: 56  PKQPVMVKAEGSSRRAEEKIEGVGGACVLVA 86


>UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1;
           Encephalitozoon cuniculi|Rep: 60S ribosomal protein L27a
           - Encephalitozoon cuniculi
          Length = 147

 Score = 38.7 bits (86), Expect = 0.025
 Identities = 17/69 (24%), Positives = 40/69 (57%)
 Frame = -1

Query: 280 WTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXLPKQPVIVKAKFFSKTAEQKIK 101
           W ++ ++ R  +    + KVPVI++ +             ++P++VKA++F+ +A+++I 
Sbjct: 79  WGMIPKEQRYDFLDNPE-KVPVIDVREFGYHVVVGGKLSLERPIVVKARYFTPSAKEEIT 137

Query: 100 AVGGVCVLS 74
            VGG  +++
Sbjct: 138 KVGGKWIIT 146


>UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3;
           Eukaryota|Rep: 60S ribosomal protein L27A - Guillardia
           theta (Cryptomonas phi)
          Length = 144

 Score = 36.3 bits (80), Expect = 0.13
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -1

Query: 160 KQPVIVKAKFFSKTAEQKIKAVGGVCVLS 74
           ++P ++KA  FSK A +KIK  GG C+L+
Sbjct: 115 QKPFVIKANSFSKVAVKKIKKAGGYCILT 143


>UniRef50_O59441 Cluster: 50S ribosomal protein L15P; n=7;
           Euryarchaeota|Rep: 50S ribosomal protein L15P -
           Pyrococcus horikoshii
          Length = 147

 Score = 35.1 bits (77), Expect = 0.30
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = -1

Query: 157 QPVIVKAKFFSKTAEQKIKAVGGVCVLS 74
           +P+ +KAK FS  AE+KIKA GG  +L+
Sbjct: 120 RPLTIKAKAFSAKAEEKIKAAGGEVILA 147


>UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1;
           n=1; Arabidopsis thaliana|Rep: Putative 60S ribosomal
           protein L27a-1 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 104

 Score = 34.3 bits (75), Expect = 0.53
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 217 VINIVKAXXXXXXXXXXLPKQPVIVKAKFFSKTAEQKIKAVGGVCVLS 74
           ++N+ K              +PV+VKAK  S T E+KIK  G   VL+
Sbjct: 53  IVNLDKLWSMVLGKGFLPENKPVVVKAKLVSNTDEKKIKEAGSAVVLT 100


>UniRef50_Q8TVB7 Cluster: 50S ribosomal protein L18e; n=12;
           Archaea|Rep: 50S ribosomal protein L18e - Methanopyrus
           kandleri
          Length = 127

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 157 QPVIVKAKFFSKTAEQKIKAVGGVCV 80
           QP+ V A  FS+TA  KI+A GG C+
Sbjct: 83  QPLRVAAWRFSRTARMKIEAAGGECL 108


>UniRef50_Q9X1J0 Cluster: 50S ribosomal protein L15; n=44;
           Bacteria|Rep: 50S ribosomal protein L15 - Thermotoga
           maritima
          Length = 147

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = -1

Query: 157 QPVIVKAKFFSKTAEQKIKAVGG 89
           +P++VKA  FSK+A +KI++ GG
Sbjct: 120 KPLVVKAHAFSKSAVEKIESAGG 142


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,284,265
Number of Sequences: 1657284
Number of extensions: 2028317
Number of successful extensions: 3347
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3345
length of database: 575,637,011
effective HSP length: 70
effective length of database: 459,627,131
effective search space used: 10111796882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)