Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M08
         (280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    55   2e-09
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    54   4e-09
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   1.5  
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    24   4.6  

>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 55.2 bits (127), Expect = 2e-09
 Identities = 28/70 (40%), Positives = 40/70 (57%)
 Frame = -1

Query: 280 WTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXLPKQPVIVKAKFFSKTAEQKIK 101
           WTL+  +AR KY        PVIN++++          LP+ PVIV+ ++ S+ AE+KIK
Sbjct: 79  WTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPVIVQTRYVSRRAEEKIK 138

Query: 100 AVGGVCVLSA 71
             GGV  L A
Sbjct: 139 QAGGVVELIA 148


>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 54.0 bits (124), Expect = 4e-09
 Identities = 27/70 (38%), Positives = 38/70 (54%)
 Frame = -1

Query: 280 WTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXLPKQPVIVKAKFFSKTAEQKIK 101
           WTLV  + R KY        PVIN++++          LP  PVI++ ++ S+ AE+KIK
Sbjct: 79  WTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPVIIQTRYVSRRAEEKIK 138

Query: 100 AVGGVCVLSA 71
             GGV  L A
Sbjct: 139 QAGGVVELIA 148


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 163 PKQPVIVKAKFFSKTAEQKIKAV 95
           P++P+I+  +F+S   E++IK +
Sbjct: 17  PQKPLIITKRFYSTPGERRIKDI 39


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 87  TPPTALIFCSAVFEKNFAFTMTGC 158
           T  TA   CSA FE     T TGC
Sbjct: 340 TSSTASGRCSAQFEHTLLVTETGC 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,988
Number of Sequences: 5004
Number of extensions: 8732
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)