Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M08
         (280 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1250 - 25183375-25183815                                         54   2e-08
03_04_0027 + 16593133-16593573                                         51   2e-07
02_01_0563 + 4134954-4135388                                           49   6e-07
12_01_0236 - 1775941-1776034,1776185-1776504,1776569-1776786,177...    25   8.6  

>07_03_1250 - 25183375-25183815
          Length = 146

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 27/70 (38%), Positives = 42/70 (60%)
 Frame = -1

Query: 280 WTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXLPKQPVIVKAKFFSKTAEQKIK 101
           W++V  +   + A A  GK P++++ +           LP++P++VKAK  SK AE+KIK
Sbjct: 79  WSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEKPIVVKAKLISKVAEKKIK 136

Query: 100 AVGGVCVLSA 71
           A GG  VL+A
Sbjct: 137 AAGGAVVLTA 146


>03_04_0027 + 16593133-16593573
          Length = 146

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = -1

Query: 280 WTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXLPKQ-PVIVKAKFFSKTAEQKI 104
           W++V      K A A  GK PVI++ +           LP Q P++VKAK  SK AE+KI
Sbjct: 79  WSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQRPIVVKAKLISKVAEKKI 135

Query: 103 KAVGGVCVLSA 71
           KA GG  +L+A
Sbjct: 136 KAAGGAVLLTA 146


>02_01_0563 + 4134954-4135388
          Length = 144

 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = -1

Query: 244 ASATDGKVPVINIVK-AXXXXXXXXXXLPKQPVIVKAKFFSKTAEQKIKAVGGVCVLSA 71
           A A  GK PVI++ +             P++P++VKAK  SK AE+KIKA GG  +L+A
Sbjct: 86  AGAGAGKAPVIDVTQFGYTKVLGKGMLPPERPIVVKAKLISKVAEKKIKAAGGAVLLTA 144


>12_01_0236 -
           1775941-1776034,1776185-1776504,1776569-1776786,
           1777315-1777723
          Length = 346

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 143 ESEILLKNG*AENQGCRWSMCPV 75
           E  +LL+N    NQ C WS+ P+
Sbjct: 106 ELTLLLQNTDYINQNCHWSLLPL 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,261,098
Number of Sequences: 37544
Number of extensions: 58543
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)