Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M07
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    84   5e-18
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    27   1.1  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    25   3.2  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   9.8  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    23   9.8  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 84.2 bits (199), Expect = 5e-18
 Identities = 36/67 (53%), Positives = 52/67 (77%)
 Frame = +2

Query: 140 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 319
           E+TF+ VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 320 VKYMSSG 340
           V +M+SG
Sbjct: 64  VGFMASG 70


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 225 KPFFSKRSMIVPTRPR*TPSGLT 157
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 8   GTIKCGILISLYFISIKLN 64
           G + CG+ ++ YF SIK N
Sbjct: 122 GFLACGLYVTSYFFSIKNN 140


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 335 NSCILQDQGKTAGTLSHCNVA--AATLP 258
           NSC+L     ++ T S+ NVA   +TLP
Sbjct: 136 NSCLLSADNSSSSTTSNPNVAPPISTLP 163


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 172 TIGLNHKKGSFTLISHYFT-LN*SPRVESKLFS*ISLIQFDGDKIK*NKNAALD 14
           T+  N+KK +  L+ HY T  N    + SKL S +SL     D I   ++A LD
Sbjct: 66  TVNSNYKKNNALLLLHYLTRKNHGLFLLSKLQSLLSL-DPSTDPIPVYRDALLD 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,270,841
Number of Sequences: 5004
Number of extensions: 20749
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)