Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M07
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 99 8e-22
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 98 2e-21
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 96 6e-21
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 90 4e-19
03_02_0207 - 6411324-6412895 28 2.2
10_08_1046 + 22542074-22544749,22544837-22545544 27 2.9
08_02_0180 + 13912769-13913008,13914723-13915006,13915118-139152... 26 8.9
08_01_0325 + 2917942-2918193,2919057-2919340,2919453-2919549,291... 26 8.9
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 26 8.9
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 99.1 bits (236), Expect = 8e-22
Identities = 44/74 (59%), Positives = 55/74 (74%)
Frame = +2
Query: 119 EIMADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLAS 298
E A + ERTF+ +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY DL
Sbjct: 39 EAHAAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKD 98
Query: 299 RPFFPGLVKYMSSG 340
RPFF GL ++SSG
Sbjct: 99 RPFFNGLCDFLSSG 112
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 97.9 bits (233), Expect = 2e-21
Identities = 42/67 (62%), Positives = 54/67 (80%)
Frame = +2
Query: 140 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 319
E++F+M+KPDGVQRGL+G II RFEKKGF L G+KF+ QQHY+DL+ +PFFPGL
Sbjct: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 61
Query: 320 VKYMSSG 340
V+Y+ SG
Sbjct: 62 VEYIISG 68
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 96.3 bits (229), Expect = 6e-21
Identities = 41/67 (61%), Positives = 54/67 (80%)
Frame = +2
Query: 140 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 319
E++++M+KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY DL +PFFPGL
Sbjct: 3 EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGL 62
Query: 320 VKYMSSG 340
++Y++SG
Sbjct: 63 IEYITSG 69
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 90.2 bits (214), Expect = 4e-19
Identities = 38/67 (56%), Positives = 53/67 (79%)
Frame = +2
Query: 140 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 319
E+TF+M+KPDGVQRGL+G +I RFEKKGF L +K + + ++HY+DL+S+PFF GL
Sbjct: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGL 63
Query: 320 VKYMSSG 340
V+Y+ SG
Sbjct: 64 VEYIVSG 70
>03_02_0207 - 6411324-6412895
Length = 523
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 119 EIMADQRERTFLMVKPDGVQRGLV---GTIIERFEKKGF 226
E+++ Q RTF++ +P GV RG++ +ERF + GF
Sbjct: 64 EVLSRQPTRTFVLRRPGGV-RGVITANPANVERFLRSGF 101
>10_08_1046 + 22542074-22544749,22544837-22545544
Length = 1127
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 140 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFP 313
ER +VK +G G FE KG G +WP ++ + H +L S+P+ P
Sbjct: 195 ERRLSLVKQNGGAPGEFDHNRWLFETKGTYGYG-NAIWPEDDGVAGHPKELMSKPWRP 251
>08_02_0180 +
13912769-13913008,13914723-13915006,13915118-13915214,
13915358-13915393,13916665-13916810,13917002-13917107,
13917358-13917417,13917787-13917876
Length = 352
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 197 IIERFEKKGFKLVGLKFVWPSEEL 268
+IE + G L G++F+W SEE+
Sbjct: 127 MIEIWRAAGMNLDGVEFLWSSEEI 150
>08_01_0325 +
2917942-2918193,2919057-2919340,2919453-2919549,
2919677-2919712,2920570-2920715,2920882-2920987,
2921160-2921219,2921848-2921898
Length = 343
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 197 IIERFEKKGFKLVGLKFVWPSEEL 268
+IE + G L G++F+W SEE+
Sbjct: 131 MIEIWRAAGMNLDGVEFLWSSEEI 154
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 25.8 bits (54), Expect = 8.9
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +2
Query: 140 ERTFLMVKPDGVQRGLV-GTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD--LASRPFF 310
ER ++KP+ R L G+ ++F +KL+G+K +PS+++ + SD L S F
Sbjct: 634 ERQLDVIKPNLQSRMLKEGSEYDQF----WKLLGVKSEYPSQKIAKDQESDPHLFSCTFS 689
Query: 311 PGLVK 325
G++K
Sbjct: 690 KGVLK 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,113,796
Number of Sequences: 37544
Number of extensions: 130137
Number of successful extensions: 305
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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